View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_4 (Length: 785)

Name: NF1145_low_4
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_4
NF1145_low_4
[»] chr5 (1 HSPs)
chr5 (109-756)||(4996055-4996713)


Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 109 - 756
Target Start/End: Original strand, 4996055 - 4996713
Alignment:
Q  109 caaagggaacagaatctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996055 caaagggaacagattctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtac 4996154  T
Q  209 ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctat-------------taca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||    
T  4996155 ataaattaaatgtcattttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctatactatagctctattaca 4996254  T
Q  296 aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996255 aaaatcacaaacaaagagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggt 4996354  T
Q  396 tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996355 tgtccaaatttcttaaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggctgtgtcttgtt 4996454  T
Q  496 cttcacttatggtttctcatgcaaaattcttattgctttcaagtattcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctcca 595  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996455 cttcacttatggtttctcatgcaaaattcttattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctcca 4996554  T
Q  596 ctttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatcccnnnnnnnnncaagaccttttttgttactatcttcaagttc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  4996555 ctttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatccc--aaaaaatcaagaccttttttgttactatcttcaagttc 4996652  T
Q  696 aacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagaggagcttct 756  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4996653 aacaactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagaggagcttct 4996713  T

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