View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_41 (Length: 459)
Name: NF1145_low_41
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 29 - 444
Target Start/End: Original strand, 10441032 - 10441447
Alignment:
| Q |
29 |
agaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatcattatttaact |
128 |
Q |
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| T |
10441032 |
agaaaagatggtcaacaagtacctccaagtgacaaggtttatgaatgcattcttttccgaggaagtgacattaaggtaactatattatcattatttaact |
10441131 |
T |
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| Q |
129 |
gatttgcagtctattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtgggggagttaataagg |
228 |
Q |
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| T |
10441132 |
gatttgcagactattgttaataagagaaataagcatgtgatgaaatatttctgatttattgctcagaagcatctcaccctgtgtgggggagttaataagg |
10441231 |
T |
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| Q |
229 |
cttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgaggccttnnnnnnn |
328 |
Q |
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| T |
10441232 |
cttggctgatgttgttgtattgctgtgatatatcttagttttgaggttttaaaatatttttataatatatgaatgatttctgattgaggccttaaaaaaa |
10441331 |
T |
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| Q |
329 |
tttgttgtcccttgttcgtttatgcaacttctcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattc |
428 |
Q |
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| T |
10441332 |
tttgttgtcctttgttcgtttatgcaacttttcacaaatcataatcttttacttaatagagtgatgtgtatggttttctagttaagtattgctcaaattc |
10441431 |
T |
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| Q |
429 |
aggttcttggtgcaac |
444 |
Q |
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| T |
10441432 |
aggttcttggtgcaac |
10441447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 9993072 - 9992988
Alignment:
| Q |
360 |
tcactaatcataatcttttacttaatagagtgatttgaatggttttcttgttaagtattgctcaaattcaggttcttggtgcaac |
444 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||| | || | ||||| ||||||| | |||||||||||||| |
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| T |
9993072 |
tcactaatcataatcttttacttaatagattgatgtgtatggttttcattttcaatattggtcaaatttaagttcttggtgcaac |
9992988 |
T |
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