View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_48 (Length: 435)
Name: NF1145_low_48
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 29763037 - 29762706
Alignment:
| Q |
16 |
atagagagtaaagtgactagtaagactaaaactaccagtgagccattttcctgctggaacatacagctgagaaccaccttgagaaccatactgactcagg |
115 |
Q |
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| T |
29763037 |
atagagagtaaagtgactagtaagactaaaactaccagtgagccattttcctgctggaacatacagctgagaaccaccttgagaaccatactgactcagg |
29762938 |
T |
|
| Q |
116 |
tgactaattgcagactgaaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaatgaagcactatgtgctctacaatttatac |
215 |
Q |
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| T |
29762937 |
tgactaattgcagactgaaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaatgaagcactatgtgctctacaatttatac |
29762838 |
T |
|
| Q |
216 |
cattgtacacaaatgaagttgtcacaatttttgattttctactttcaactctttctggatacaccagtgtcaccacaaatattgctaaaaatatttgaat |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29762837 |
cattgtacacaaatgaagttgtcacaatttttgcttttctactttcaactctttctggatacaccagtgtcaccacaaatattgctaaaaatatttgaat |
29762738 |
T |
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| Q |
316 |
catctgtaaagtatatacatagccatggaaat |
347 |
Q |
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| T |
29762737 |
catctgtaaaatatatacatagccatggaaat |
29762706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 34506091 - 34506144
Alignment:
| Q |
133 |
aaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaa |
186 |
Q |
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| T |
34506091 |
aaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaa |
34506144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 11065036 - 11065250
Alignment:
| Q |
20 |
agagtaaagtgactagtaagactaaaactaccagtgagccattttcctgctggaacatacagctgagaaccaccttgagaaccatactgactcaggtgac |
119 |
Q |
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||||| |||||||| |||||||||| || ||||| ||||||||||| || |||||||||| ||||| || |||| |||| ||| |||||||| |||| |
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| T |
11065036 |
agagtgaagtgacttataagactaaagctcccagtaagccattttccagcaggaacatacaattgagaccctccttcagaagcattctgactcaaatgac |
11065135 |
T |
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| Q |
120 |
taattgcagactgaaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaatgaagcactatgtgctctacaatttataccatt |
219 |
Q |
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| |||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| | || | |
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| T |
11065136 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatccttcaatgaaacactatgtgccctacaatttagagcact |
11065235 |
T |
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| Q |
220 |
gtacacaaatgaagt |
234 |
Q |
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|||| |||| ||||| |
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| T |
11065236 |
gtactcaaaagaagt |
11065250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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