View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_49 (Length: 427)
Name: NF1145_low_49
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 6927849 - 6928243
Alignment:
| Q |
11 |
tagctgttgcaggtgtattggtgagttttctttctcaattcttg--aatctcctcctttttgctttcctttgcaagtcattggcatggttgatacagtaa |
108 |
Q |
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| T |
6927849 |
tagcagttgcaggcgtattggtgagttttcttccacgatttttttaaatttcctcctctttgctttcctttacaagtcattggcatggttgatacagtaa |
6927948 |
T |
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| Q |
109 |
ctatacattccttatactcaaactaatgttt-aacctgaaattctctcgtattttcttctttgtgtaaacagatctacatagcagcattttcaattgggt |
207 |
Q |
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| T |
6927949 |
ctatacattacttatactcaaaataatgttttaacatgaaaatatctcatattttcttctt---gtaaacagatctacatagcagcattttcaattgggt |
6928045 |
T |
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| Q |
208 |
tgggatcagttccttgggtgatgatgtctgaggtatgt-atcattcgacaa----agcaccaaaaattgtaatggtttagctagactcttagcata--cc |
300 |
Q |
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| T |
6928046 |
tgggatcagttccttgggtgatgatgtctgaggtatgttatcatttgacatgtacagcaccaaaaaatttaatggtttagctagactcttagcatatacc |
6928145 |
T |
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| Q |
301 |
agtaaagaaaaaatacttttcttattgcaggtgtttcctataaatgtgaaaggaactgctggaagtttggtggttttggtagcgtggctaggggcttg |
398 |
Q |
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| T |
6928146 |
agtaaagaaaaaatacttttcttattgcaggtgtttcctataaatgtgaaaggaactgctggaagtttggtagttttggtagcgtggttaggagcttg |
6928243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 49134164 - 49134228
Alignment:
| Q |
187 |
tagcagcattttcaattgggttgggatcagttccttgggtgatgatgtctgaggtatgtatcatt |
251 |
Q |
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| T |
49134164 |
tagcagcattttcaattggaatgggaccggttccttgggtaataatgtctgaggtatgtgtcatt |
49134228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 49134437 - 49134498
Alignment:
| Q |
317 |
ttttcttattgcaggtgtttcctataaatgtgaaaggaactgctggaagtttggtggttttg |
378 |
Q |
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| T |
49134437 |
ttttcatattgcagatctttcctatacatgtaaagggaactgctgggagtttggtagttttg |
49134498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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