View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_5 (Length: 708)
Name: NF1145_low_5
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 613
Target Start/End: Complemental strand, 53501739 - 53501136
Alignment:
| Q |
9 |
agcaaaggcattcattaccattagggagctaacaagaagaggaattagaattaacatgttgaaatcatttgaagaaaccatctctataatgaagtgtttg |
108 |
Q |
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| T |
53501739 |
agcaaaggcattcattaccattagggagctaacaagaagaggaattagaattaacatgttgaaatcatttgaagaaaccatctctataatgaagtgtttg |
53501640 |
T |
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| Q |
109 |
aaagttgatagtagtagggagtgatagtctttgttaaattagaa-gtttagaagtgaatgataaagaagggtgaatgttgctatttataaaatgaatatt |
207 |
Q |
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| T |
53501639 |
aaagttgatagtagtagggagtgatagtctttgttaaattagaaagtttagaagtgaatgataaagaagggtgaatgttgctatttataaaataaatatt |
53501540 |
T |
|
| Q |
208 |
gaaccgttagtgatgataataattatgagaaatttgaaagagccaagaagctggacacagttgccgcgtttatttatgtacatcaataaaatgtgtccaa |
307 |
Q |
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| T |
53501539 |
gaaccgttagtgatgataataattatgagaaatttgaaagagccaagaagctggacacagttgccgcgtttatttatgtacatcaataaaatgtgtccaa |
53501440 |
T |
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| Q |
308 |
ttgacaggcggtattgtcnnnnnnncataaaatcttttacgcggttgttgtctttttcattaattatgaacagagtttgagttaaaagttgttgtca--- |
404 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53501439 |
ttgacaggcggtattgtcaaaaaaacataaaatcttttacgcggttgttgtctttttcattaattatgaacagagtttgagttaaaagttgttgtcaagg |
53501340 |
T |
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| Q |
405 |
-agtagtaaaaattaaagtcactccaactccatctattgggtgtgagagagtgccaaccaagcataaaacaattccagctaagctaataactcccttaac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53501339 |
gagtagtaaaaattaaagtcactccaactccatctattgggtgtgagagagtgccaaccaagcatcaaacaattccagctaagctaataactcccttaac |
53501240 |
T |
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| Q |
504 |
tttaagacgtttcaccaccgccactgcatattgaacaaaacagacaaaacaatgtcac---tcgtgggtggacagtggacacacctaaatctagtacgag |
600 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53501239 |
tttaagacgtttcaccaccgccactgcatattga---------acaaaacaatgtcactcgtcgtgggtggacagtggacacacctaaatctagtacgag |
53501149 |
T |
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| Q |
601 |
ttggtggtgtctg |
613 |
Q |
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| T |
53501148 |
ttggtggtgtctg |
53501136 |
T |
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