View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_50 (Length: 425)
Name: NF1145_low_50
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 36871996 - 36871608
Alignment:
| Q |
30 |
aacctcttgtctacataattaccaaactagcctcacttcaatttcacttcctaacaaccttgtctcttcatgctttgatccatctcaatttgttgccaca |
129 |
Q |
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| T |
36871996 |
aacctcttgtctacataattaccaaactagcctcacttcaatttcacttcctaacaaccttgtctcttcatgctttgatccatctcaatttgttgccaca |
36871897 |
T |
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| Q |
130 |
ccagacacatgtgctcaaattcaaaccaaacaagattggcttaacaaagttgattcaacagatttaactgttcttgataatgtttgtgaaccagatttaa |
229 |
Q |
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| T |
36871896 |
ccagacacatgtgctcaaattcaaaccaaacaagattggcttaacaaagttgattcaacagatttaactgttcttgataatgtttgtgaaccagatttaa |
36871797 |
T |
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| Q |
230 |
cagattcagatcattgtcatgtttgtaaaaatcaagggtttaaggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgttt |
329 |
Q |
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| T |
36871796 |
cagattcggatcattgtcatgtttgtaaaaatcaagggtttaaggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgttt |
36871697 |
T |
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| Q |
330 |
ttattttacaatactatatatagctggaattgtgaataaacttggtcctgagagtacaggtgttttggcttgcattcttattttgttgg |
418 |
Q |
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| T |
36871696 |
ttattttacaatactatatatagctggaattgtgaataaacttggtcctgagagtacaggtgttttggcttgcattcttattttgttgg |
36871608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 36878344 - 36878283
Alignment:
| Q |
271 |
aaggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgttttta |
332 |
Q |
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| T |
36878344 |
aaggttcaagagaagctgaatcaaattgatggtaatagttcacattccaaagattgctttta |
36878283 |
T |
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