View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_52 (Length: 423)

Name: NF1145_low_52
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_52
NF1145_low_52
[»] chr1 (17 HSPs)
chr1 (28-244)||(25478720-25478936)
chr1 (118-301)||(25869248-25869431)
chr1 (243-330)||(25478370-25478457)
chr1 (36-232)||(24629199-24629398)
chr1 (36-234)||(24512918-24513119)
chr1 (36-234)||(25610954-25611152)
chr1 (37-233)||(24242846-24243042)
chr1 (36-218)||(24221984-24222166)
chr1 (36-232)||(23896125-23896321)
chr1 (46-234)||(24634803-24634993)
chr1 (45-234)||(24246494-24246687)
chr1 (179-232)||(24805200-24805253)
chr1 (169-206)||(24226424-24226461)
chr1 (47-99)||(24626771-24626823)
chr1 (194-233)||(45693042-45693081)
chr1 (47-81)||(24233418-24233452)
chr1 (194-232)||(24233565-24233603)
[»] chr4 (1 HSPs)
chr4 (36-232)||(11032774-11032973)
[»] chr5 (2 HSPs)
chr5 (45-231)||(3181582-3181771)
chr5 (175-231)||(41973595-41973651)
[»] chr7 (2 HSPs)
chr7 (36-100)||(1421157-1421221)
chr7 (171-233)||(1421298-1421360)
[»] scaffold0015 (2 HSPs)
scaffold0015 (36-111)||(32317-32392)
scaffold0015 (36-100)||(40369-40433)
[»] chr6 (7 HSPs)
chr6 (172-233)||(9819956-9820017)
chr6 (172-233)||(9825636-9825697)
chr6 (174-232)||(1471058-1471116)
chr6 (173-232)||(370919-370978)
chr6 (49-98)||(24417487-24417536)
chr6 (188-232)||(4183147-4183191)
chr6 (188-232)||(4743991-4744035)
[»] chr3 (10 HSPs)
chr3 (49-100)||(2696733-2696784)
chr3 (49-100)||(4142135-4142186)
chr3 (49-100)||(4157945-4157996)
chr3 (49-99)||(7942485-7942535)
chr3 (49-101)||(3754598-3754650)
chr3 (36-99)||(2456249-2456312)
chr3 (49-99)||(1437996-1438045)
chr3 (174-231)||(2459146-2459203)
chr3 (50-99)||(13498224-13498273)
chr3 (49-97)||(23197014-23197062)
[»] chr2 (3 HSPs)
chr2 (49-99)||(36577366-36577416)
chr2 (37-99)||(7160743-7160805)
chr2 (172-230)||(7174503-7174561)
[»] chr8 (1 HSPs)
chr8 (169-206)||(23773967-23774004)
[»] scaffold0200 (1 HSPs)
scaffold0200 (175-231)||(903-959)
[»] scaffold0044 (1 HSPs)
scaffold0044 (49-101)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 25478936 - 25478720
Alignment:
Q  28 agaagaaaaaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaataca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25478936 agaagaaaaaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcaagaaaataca 25478837  T
Q  128 cacaaacaatccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25478836 cacaaacaatccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaa 25478737  T
Q  228 caatggcttgtgtgcga 244  Q
    |||||||||||||||||    
T  25478736 caatggcttgtgtgcga 25478720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 118 - 301
Target Start/End: Original strand, 25869248 - 25869431
Alignment:
Q  118 agaaaatacacacaaacaatccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  25869248 agaaaatacacacaaacaatccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatgtcttgataggactcttttcccaaa 25869347  T
Q  218 tgaagagaaacaatggcttgtgtgcgagtattaacattagaatttgcaaaccaattaactgtgccaccgactattattccctct 301  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25869348 tgaagagaaacaatggcttgtctgcaagtattaacattagaatttgcaaaccaattaactgtgccaccgactattattccctct 25869431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 25478457 - 25478370
Alignment:
Q  243 gagtattaacattagaatttgcaaaccaattaactgtgccaccgactattattccctctttaccagaagggatcatcatagaaggaaa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25478457 gagtattaacattagaatttgcaaaccaattaactgtgccaccgactattattccctctttaccagaagggatcatcatagaaggaaa 25478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 24629199 - 24629398
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||  | ||  ||| |||    ||||||| |||||  ||    
T  24629199 aaggaagatggatgaatttaatccaagactctttatttccgtattccttcataagccaaacatctgtaaaaaagtgagaatacgaaaatatacacaggca 24629298  T
Q  136 atccttcatgatacccaacgtcaagttacttggcatt---ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||| |||| |||||||| ||||||| | | ||  ||    |||| | ||||| |||||||||||| ||| ||||||||||||| | |||||||||||||    
T  24629299 atccctcatcatacccaaggtcaagtaaatgggtttttcatcatagttaggctctgaaatctcttggtaacactctttccccaagtcaagagaaacaatg 24629398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 24513119 - 24512918
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    ||||||||||||||||||||||||| || |||||| | || ||||| |||||||||||||||||| | || |||| |||  ||||| |||  ||||||||    
T  24513119 aaggaagatggatcaatttaatccatgactctttacttccatattctttcataagccaaacatcattgaaagagttagaatgagaacatatgcacaaaca 24513020  T
Q  136 atccttcatgatacccaacgtcaagttacttggcattc---cataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||  | || |||||||| || || | |   |||||||   |||| | ||| | |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  24513019 atctcttatcatacccaaggtaaaataaaccggcattccatcatagttaggttctgaaatctcttggtaacactctttccccaaatcaagagaaacaatg 24512920  T
Q  233 gc 234  Q
    ||    
T  24512919 gc 24512918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 25610954 - 25611152
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||   |||| || |||   ||||||||  ||||||||    
T  25610954 aaggaagatgaatcaatttaacccaagattctttatttccgtattccgtcattagccaaacatcataaaatgggtgagaataagaaaatatgcacaaaca 25611053  T
Q  136 atccttcatgatacccaacgtcaagttacttggcatt-ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatggc 234  Q
    |||  |||| | ||||||  |||| || ||    ||| |||| |||||| || ||||| |||| |||||| |||||||| ||||||||||||||||||||    
T  25611054 atctctcatcacacccaagttcaa-tttctcaaaattcccatgatcaggatgcgaaatttcttcataagattctttccctaaatgaagagaaacaatggc 25611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 24242846 - 24243042
Alignment:
Q  37 aggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaa 136  Q
    ||||||| | || |||||||||||||| |||||||| ||||||  ||||||||||||||||||| | || ||||||||   ||||||||  |||||  ||    
T  24242846 aggaagacgaattaatttaatccaagactctttatttccgtatatcttcataagccaaacatcagtaaaagagtcagaataagaaaataggcacaagaaa 24242945  T
Q  137 tccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatgg 233  Q
    |||  ||| | |||||  |||||  ||        ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||    
T  24242946 tcccgcatcacacccatggtcaacctaacaaaatctccataatcaggctgtgaaatatcttggtaagattctttccccaaatcaagagaaacaatgg 24243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 24221984 - 24222166
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    |||||||| ||||||| |||| ||||||||||| |||  |||| ||| ||| ||||||||||||| | |||||||| ||  |||||| ||  ||||||||    
T  24221984 aaggaagacggatcaacttaacccaagattcttgattttcgtaatccatcaaaagccaaacatcattaaatgagtcggaatgagaaactatgcacaaaca 24222083  T
Q  136 atccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaat 218  Q
    |||| |||  |||| ||  ||||| |||     ||||||||||||||| || ||||||||||  ||||||||| |||||||||    
T  24222084 atccctcagcatacacatggtcaacttaacaaacattccataatcaggttgcgaaatctctttgtaagactctatccccaaat 24222166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 23896125 - 23896321
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    |||||| ||| || ||||||| |||||| |||||||| || |||||||||||||||||||||||||| || |||| |||   || |||||| ||||  ||    
T  23896125 aaggaacatgaataaatttaacccaagactctttatttccatattccttcataagccaaacatcaataaaagagtaagaattagcaaatacgcacaggca 23896224  T
Q  136 atccttcatgatacccaacgtcaagttacttggcattccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||| |||| |||||||| ||||| |||  |   |||||||| | ||| |||  ||||||||| ||| |||||||  | |||| ||| |||||||||    
T  23896225 atccctcatcatacccaaggtcaacttatctataattccatagttaggttgttgaatctcttggtaacactctttttctaaatcaagtgaaacaatg 23896321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 24634803 - 24634993
Alignment:
Q  46 gatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaatccttcatg 145  Q
    |||||||| |||| |||| |||||| | ||||||||||||||||||||||||||| |  | ||||||||  ||||| |||  |||||| ||||| | ||     
T  24634803 gatcaattcaatctaagactctttaattccgtattccttcataagccaaacatcattagaagagtcagaatgagaacatatgcacaaa-aatcccttatc 24634901  T
Q  146 atacccaacgtcaagttacttggcattc---cataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatggc 234  Q
    |||||||| || ||   |   |||||||   |||| | ||||| | |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  24634902 atacccaaggtaaaagaaaccggcattccatcatagttaggctctaaaatctcttggtaacactctttccccaaatcaagagaaacaatggc 24634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 24246494 - 24246687
Alignment:
Q  45 ggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaatccttcat 144  Q
    |||||||||| |||||||| |||||||| |||||||| |||||||||||||||||| | ||  | || ||  |||||||||  ||||| |||||| | ||    
T  24246494 ggatcaatttcatccaagactctttatttccgtattctttcataagccaaacatcagtaaaatattctgaatgagaaaatatgcacaagcaatcccttat 24246593  T
Q  145 gatacccaacgtcaagttacttggc----attccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatggc 234  Q
     |||||||| ||| ||| |   |||    ||||| |  | ||||| |||||||||||| ||| |||||||||| |||| || ||||||||||||    
T  24246594 catacccaaggtcgagtaaaccggcattaattccgtggttaggctctgaaatctcttggtaacactctttccctaaatcaaaagaaacaatggc 24246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 24805200 - 24805253
Alignment:
Q  179 tcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||||| ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  24805200 tcaggcagtgaaatctctttgtaagactctttccccaaatcaagagaaacaatg 24805253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 24226424 - 24226461
Alignment:
Q  169 cattccataatcaggctgtgaaatctcttgataagact 206  Q
    |||||||||||||||||||||||||||||| |||||||    
T  24226424 cattccataatcaggctgtgaaatctcttggtaagact 24226461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 24626771 - 24626823
Alignment:
Q  47 atcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    |||||||||| |||||| |||||| | | ||||||||||||||||||||||||    
T  24626771 atcaatttaacccaagactctttaattctgtattccttcataagccaaacatc 24626823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 45693042 - 45693081
Alignment:
Q  194 tcttgataagactctttccccaaatgaagagaaacaatgg 233  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  45693042 tcttgataagattccttccccaaatgaagagaaacaatgg 45693081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 24233418 - 24233452
Alignment:
Q  47 atcaatttaatccaagattctttattaccgtattc 81  Q
    |||||||||||||||||||||||||| ||||||||    
T  24233418 atcaatttaatccaagattctttatttccgtattc 24233452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 24233565 - 24233603
Alignment:
Q  194 tcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  24233565 tcttgataagattccttccccaaatgaagagaaacaatg 24233603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 11032973 - 11032774
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaaca 135  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||  | || |||| |||    ||||||| |||||  ||    
T  11032973 aaggaagatggatcaatttaatccaagactctttatttccgtattccttcatgagccaaacatcggtaaaagagtgagaatatgaaaatatacacaggca 11032874  T
Q  136 atccttcatgatacccaacgtcaagttacttggcatt---ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||| |||| |||||||| ||||||| | | ||  ||    |||| | ||||| |||||||||||| ||| ||||||||||||| | |||||||||||||    
T  11032873 atccctcatcatacccaaggtcaagtaaatgggtttttcatcatagttaggctctgaaatctcttggtaacactctttccccaagtcaagagaaacaatg 11032774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 3181771 - 3181582
Alignment:
Q  45 ggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtcagagcgagaaaatacacacaaacaatccttcat 144  Q
    ||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||   || ||||| ||  ||||||||||||||||||| ||| ||||    
T  3181771 ggatcaatttaatccaagactcttcatttccatattccttcataagccaaacatcatcaaaagagtcggaatgagaaaatacacacaaacattccctcat 3181672  T
Q  145 gatacccaacgtcaagtta--cttggcat-tccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaat 231  Q
       ||||||  |||| |||    |  |||  ||||||||||||||||||||||||||||||   ||||||| ||||| ||||||||||||    
T  3181671 cgcacccaaactcaacttaacggttacatcaccataatcaggctgtgaaatctcttgataaatttctttccgcaaatcaagagaaacaat 3181582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 41973595 - 41973651
Alignment:
Q  175 ataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaat 231  Q
    ||||| ||||||  ||| ||||||||||||||| ||||| |||| ||||||||||||    
T  41973595 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaacaat 41973651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 1421157 - 1421221
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 100  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  1421157 aaggaagatgaatcaatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 1421298 - 1421360
Alignment:
Q  171 ttccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatgg 233  Q
    ||||||||| ||| || |  |||||||||||||| || |||||||||||||||||||||||||    
T  1421298 ttccataatgaggttgcggtatctcttgataagattccttccccaaatgaagagaaacaatgg 1421360  T

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Target: scaffold0015 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 32317 - 32392
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatcaatcaatgagtc 111  Q
    |||||||| | ||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || |||||    
T  32317 aaggaagacgaatcaatttaatccaagagtctttatttccatattccttcataagccaaacatcaataaaagagtc 32392  T

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Target: scaffold0015; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 40369 - 40433
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatca 100  Q
    |||||||| | ||||||||||||||||| ||||||||  | ||||||||||||||||||||||||    
T  40369 aaggaagacgaatcaatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 9819956 - 9820017
Alignment:
Q  172 tccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatgg 233  Q
    |||||||||||||||  ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  9819956 tccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatgg 9820017  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 9825636 - 9825697
Alignment:
Q  172 tccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatgg 233  Q
    |||||||||||||||  ||||||||||||| |||||| ||||||||| ||||||||||||||    
T  9825636 tccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatgg 9825697  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 1471058 - 1471116
Alignment:
Q  174 cataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||||||||||||| ||||||||||||||||||| || || |||| |||||||| ||||    
T  1471058 cataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatg 1471116  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 370919 - 370978
Alignment:
Q  173 ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||||||||||||| ||||||||||||||| |||||||  | |||| |||||||| ||||    
T  370919 ccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatg 370978  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 24417487 - 24417536
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacat 98  Q
    ||||||| |||||||||||||||| || ||||| ||||||| ||||||||    
T  24417487 caatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 4183147 - 4183191
Alignment:
Q  188 gaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||| ||||||||||||||| |||  |||||||||||||||||||    
T  4183147 gaaagctcttgataagactccttctgcaaatgaagagaaacaatg 4183191  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 4743991 - 4744035
Alignment:
Q  188 gaaatctcttgataagactctttccccaaatgaagagaaacaatg 232  Q
    |||| ||||||||||||||| |||  |||||||||||||||||||    
T  4743991 gaaaactcttgataagactccttctgcaaatgaagagaaacaatg 4744035  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 2696733 - 2696784
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 100  Q
    ||||||||||||||| |||||||| || ||||||||||||| ||||||||||    
T  2696733 caatttaatccaagactctttatttccatattccttcataatccaaacatca 2696784  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 4142135 - 4142186
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 100  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  4142135 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4142186  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 4157945 - 4157996
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 100  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  4157945 caatttagtccaagactctttatttccatattccttcataagccaaacatca 4157996  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 7942535 - 7942485
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    ||||||||||||||| ||||||||||| || |||||||||| |||||||||    
T  7942535 caatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3754650 - 3754598
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 101  Q
    ||||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  3754650 caatttagtccaagactctttatttccatattccttcataacccaaacatcaa 3754598  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 2456312 - 2456249
Alignment:
Q  36 aaggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    |||||| ||||  ||||||| ||||||| |||||||| || ||||||||||||| |||||||||    
T  2456312 aaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 1438045 - 1437996
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||||    
T  1438045 caatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 2459203 - 2459146
Alignment:
Q  174 cataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaat 231  Q
    |||| ||||||||  |||||||||||||||| || ||||||||||  |||||||||||    
T  2459203 catactcaggctgcaaaatctcttgataagattcattccccaaatcgagagaaacaat 2459146  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  50 aatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    |||||| ||||||| |||||||| || ||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23197062 - 23197014
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaaca 97  Q
    ||||||| |||||||||||| ||| || ||||||||||| |||||||||    
T  23197062 caatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 36577416 - 36577366
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    ||||||||||||||| |||||||| || ||||||||||||| |||||||||    
T  36577416 caatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 7160743 - 7160805
Alignment:
Q  37 aggaagatggatcaatttaatccaagattctttattaccgtattccttcataagccaaacatc 99  Q
    ||||||| ||| ||||||| ||||||| || ||||| || || ||||||||||||||||||||    
T  7160743 aggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
Q  172 tccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaa 230  Q
    |||||||||||||||  | ||||||  ||||||||| ||| ||||||||||||||||||    
T  7174503 tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa 7174561  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 23774004 - 23773967
Alignment:
Q  169 cattccataatcaggctgtgaaatctcttgataagact 206  Q
    |||||||||||||||||||||||||||||| |||||||    
T  23774004 cattccataatcaggctgtgaaatctcttggtaagact 23773967  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 903 - 959
Alignment:
Q  175 ataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaat 231  Q
    ||||| ||||||  ||| ||||||||||||||| ||||| |||| ||||||||||||    
T  903 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaacaat 959  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 89193 - 89141
Alignment:
Q  49 caatttaatccaagattctttattaccgtattccttcataagccaaacatcaa 101  Q
    ||||||| ||||||| |||||||| || ||||||||||||| ||||| |||||    
T  89193 caatttagtccaagactctttatttccatattccttcataacccaaatatcaa 89141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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