View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_53 (Length: 421)
Name: NF1145_low_53
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Original strand, 33368137 - 33368520
Alignment:
| Q |
30 |
ggaggaggatggggcggaggaggtggaagaggagatcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaaga |
129 |
Q |
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| T |
33368137 |
ggaggaggatggggcggaggaggtggaagaggagatcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaaga |
33368236 |
T |
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| Q |
130 |
tggttagagagaaagggtactgttgttgatgattgcttgtgatgaggagaagggtggaggagtatgagttttggatttgaattgttcttcatttttcttt |
229 |
Q |
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| T |
33368237 |
tggttagagagaaagggtactgttgttgatgattgcttgtgatgaggagaagggtgtaggagtatgagttttggatttgaattgttcttcatttttcttt |
33368336 |
T |
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| Q |
230 |
ttggggaatagagagaacaaatagtattatcactctatcaagaatgagataagtacatgcatttttgaataatgcttc-tttgtatttgagtatctaatc |
328 |
Q |
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| T |
33368337 |
ttggggaatagagagaacaaatagtattatcactctatcaagaatgagataagtacatgtatttttgaataatgcttcttttgtatttgagtatctgatc |
33368436 |
T |
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| Q |
329 |
gtatgcacagagacttacaaaacaaataaatgctgaaatagtgtaagatttgatgacaatgctctcaaggattttcagtataat |
412 |
Q |
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| T |
33368437 |
gtatgcacatagacttacaaaacaaataaatggtgaaatagtgtgagatttgatgacaatgctctcaaggattttcagtgtaat |
33368520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 33372341 - 33372412
Alignment:
| Q |
33 |
ggaggatggggcggaggaggtggaagaggagatcatggttgtgattagagtaagagtgaagactatagtgaagaa |
107 |
Q |
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| T |
33372341 |
ggaggatgtggccgaggaggtggaagaggtgat---ggtggtgatgagagtgagagtgaagactatagtgaagaa |
33372412 |
T |
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