View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_54 (Length: 419)
Name: NF1145_low_54
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 45155007 - 45155387
Alignment:
| Q |
9 |
gaagaatatgccaatgcatttcgtactgaatcatacgtagagttttggacacgcgtggtttcatattccaatggtccacaacgtcgttcttgtttatcaa |
108 |
Q |
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| T |
45155007 |
gaagaatatgccaatgcatttcgtactgaatcatacgtagagttttggacacgcgtggtttcatattccaatggtccacaacgtcgttcttgtttatcaa |
45155106 |
T |
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| Q |
109 |
gagaagagtccaccacatcaacccgacttccctcttaccgtttatttgcagagcatctcttggatccagatcaacccacggttactcagatcctgaccca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45155107 |
gagaagagtccaccacatcaacccgacttccctcttaccgtttatttgcagagcatctcttggatccagatcaacccacggttactcagatcctaaccca |
45155206 |
T |
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| Q |
209 |
aaccaaacttcaacccgaaattcaatctcttctattagactactttgcctacacttctaatgcatctatactttgtagtcatttgttaaaagacattgat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45155207 |
aaccaaacttcaacccgaaattcaatctcttctattagactactttgcctacacttctaatgcatctgtactttgtagtcatttgttaaaagacattgat |
45155306 |
T |
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| Q |
309 |
ggtgtgcgtgtaaaatatagatcacttaataccattcttcaatgtgttacaactaatcaaataccttctcctaaggtagtg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45155307 |
ggtgtgcgtgtaaaatatagatcacttaataccattcttcaatgtgttacaactaatcaaataccttctcctaaggtagtg |
45155387 |
T |
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