View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_55 (Length: 419)
Name: NF1145_low_55
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 45155011 - 45155387
Alignment:
| Q |
13 |
aatatgccaatgcatttcgtactgaatcatacgtagagttttggacacgcgtggtttcatattccaatggtccacaacgtcgttcttgtttatcaagaga |
112 |
Q |
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| T |
45155011 |
aatatgccaatgcatttcgtactgaatcatacgtagagttttggacacgcgtggtttcatattccaatggtccacaacgtcgttcttgtttatcaagaga |
45155110 |
T |
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| Q |
113 |
agagtccaccacatcaacccgacttccctcttaccgtttatttgcagagcatctcttggatccagatcaacccacggttactcagatcctgacccaaacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45155111 |
agagtccaccacatcaacccgacttccctcttaccgtttatttgcagagcatctcttggatccagatcaacccacggttactcagatcctaacccaaacc |
45155210 |
T |
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| Q |
213 |
aaacttcaacccgaaattcaatctcttctattagactactttgcctacacttctaatgcatctatactttgtagtcatttgttaaaagacattgatggtg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45155211 |
aaacttcaacccgaaattcaatctcttctattagactactttgcctacacttctaatgcatctgtactttgtagtcatttgttaaaagacattgatggtg |
45155310 |
T |
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| Q |
313 |
tgcgtgtaaaatatagatcacttaataccattcttcaatgtgttacaactaatcaaataccttctcctaaggtagtg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45155311 |
tgcgtgtaaaatatagatcacttaataccattcttcaatgtgttacaactaatcaaataccttctcctaaggtagtg |
45155387 |
T |
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