View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_60 (Length: 408)
Name: NF1145_low_60
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 39941927 - 39942302
Alignment:
| Q |
1 |
actgaaggaatgctgactgcaaaaagtccttttcttaagctatcataatcataattgcttaagaattagtaatttaaacatgacatctaatactatataa |
100 |
Q |
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| T |
39941927 |
actgaaggaatgctgactgcaaaaagtccttttcttaagttatcctaatcataattgcttaagaattagtaatttaaacatgacatctaatactatataa |
39942026 |
T |
|
| Q |
101 |
acatatatgttagtaataccatagagtttgaatattttgaagttttttgtcatgccaacttgctcttttacccttcttgagaaatgttttgttaactaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39942027 |
acatatatgttagtaataccatagagtttgaatattttgaagttttttgtcatgccaacttgctcttttaccctt---gagaaatgttttgttaactaaa |
39942123 |
T |
|
| Q |
201 |
acttacgatctagtagtactacctcagtggactttcataatttttaagttgcaattacttcaattcgattcaatgtggattttcattggaatgagtggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39942124 |
acttacgatctagtagtactacctcagtggactttcataatttttaagttgcaattacttcaattcgattcaatgtggattttcattggaatgagtggaa |
39942223 |
T |
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| Q |
301 |
cctcaatttctatttggactctgagttggataaatgttttatgctctaatagttaattgcagttctgatacaatgacct |
379 |
Q |
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| T |
39942224 |
cctcaatttctatttcgactctgagttggataaatgttttatgctctaatagttaattgcagttctgatacaatgacct |
39942302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 28740824 - 28740691
Alignment:
| Q |
107 |
atgttagtaataccatagagtttgaatattttgaagttttttgtcatgccaacttgctcttttacccttcttgagaaatgttttgttaactaaaacttac |
206 |
Q |
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||||||||||||| ||||| ||| | |||||| ||||||||||||||||||| | ||||||| || || ||||||||||| | |||||||||||| |
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| T |
28740824 |
atgttagtaatacaatagaatttaagtattttaaagttttttgtcatgccaatattctcttttgcctttgttgagaaatgtggtaaaaactaaaactta- |
28740726 |
T |
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| Q |
207 |
gatctagtagtactacctcagtggactttcataattt |
243 |
Q |
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|| | ||||||||||||||||| ||||||| |||| |
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| T |
28740725 |
-at-tgctagtactacctcagtggtctttcatgattt |
28740691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28741047 - 28740995
Alignment:
| Q |
1 |
actgaaggaatgctgactgcaaaaagtccttttcttaagctatcataatcata |
53 |
Q |
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|||||||||||||| |||||||||| ||| | ||||||| ||||||||||||| |
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| T |
28741047 |
actgaaggaatgctaactgcaaaaaatccctctcttaagatatcataatcata |
28740995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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