View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_61 (Length: 408)
Name: NF1145_low_61
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 52580608 - 52580303
Alignment:
| Q |
6 |
agtagcataggcgaagaaaagatggccgttaatgttactagctttcatatcaatttcaacagtgatgattcttttcatgagacctaacaattccgattca |
105 |
Q |
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| T |
52580608 |
agtagcattggcgaagaaaagatggccgttaatgttactagctttcatatcaatttcaacagtgatgattcttttcatgagacctaacaattccgattca |
52580509 |
T |
|
| Q |
106 |
tgcaacacaacaaagaccttcgaagcacaacagagtcagattcatccctcctccgtcggaaatgcaccatctggtccaagccccttggatttcatgaaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52580508 |
tgcaacacaacaaagaccttcgaagcacaacagagtcagattcatccctcctccgtcggaaatgcaccagctggtccaagccccttggatttcatgaaat |
52580409 |
T |
|
| Q |
206 |
cgaagcttgttctcatggtttcgcatgaactatctctttctggtggacctttacttttgatggaattggcgtttttgttgagaggtgttggttctgatgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580408 |
cgaagcttgttctcatggtttcgcatgaactatctctttctggtggacctttacttttgatggaattggcgtttttgttgagaggtgttggttctgatgt |
52580309 |
T |
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| Q |
306 |
tgtttg |
311 |
Q |
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|||||| |
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| T |
52580308 |
tgtttg |
52580303 |
T |
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