View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_64 (Length: 402)
Name: NF1145_low_64
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 34879801 - 34879978
Alignment:
| Q |
78 |
aaattcccttctcctccggagtccacaaccacacgtcatccacaccacccacattaactctttcgatgatagccactggattctcaattaaattaacttc |
177 |
Q |
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| T |
34879801 |
aaattcccttctcctccggagtccacaaccacacgtcatccacaccacccacattaactccttcgatgatagccactggattctcaattaaattaacttc |
34879900 |
T |
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| Q |
178 |
ccaatgacacggttgccgtctccaaataagattccatgataccactcaatcatgaattctccacaagtccccaacctt |
255 |
Q |
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| T |
34879901 |
ccaatgacacggttgccgtcttcaaataagattccatgataccactcaatcatgaattctccacaagtccccaacctt |
34879978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 256 - 402
Target Start/End: Original strand, 34880059 - 34880205
Alignment:
| Q |
256 |
aaaaattagtcttcctgccattgcccacttttctcaacaccctatttgtgaactaatcatcccccacactcccatccaataggatcaaatccttccaaca |
355 |
Q |
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| T |
34880059 |
aaaaattagtcttccagccattgcccacttttctcaacaccctatttgtaaactaatcatcccccacactcccatccaataggatcaaatccttccaaca |
34880158 |
T |
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| Q |
356 |
caacgatgtaaacctcaactattttgctcctaccaccagttccaaac |
402 |
Q |
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| T |
34880159 |
caacgatgtaaacctcaactattttgctcctaccaccagttccaaac |
34880205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 8475101 - 8475164
Alignment:
| Q |
6 |
atatacaagtgtccaaagtctgatgataaattacagagaatacaccaaatccaacaacctctat |
69 |
Q |
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| T |
8475101 |
atatacaagagtccaaagtctgatgatgaattacagagaatacaccaatgccaacaacctctat |
8475164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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