View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_69 (Length: 386)
Name: NF1145_low_69
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_69 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 4572341 - 4571984
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4572341 |
tgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
4572242 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4572241 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttctgatattagcatgtcctttacta |
4572142 |
T |
|
| Q |
201 |
tacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||||| |
|
|
| T |
4572141 |
tacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttctgactggtattcatttacgtacatttctagataa |
4572042 |
T |
|
| Q |
301 |
aggtctcataccactacaaggtaacaattaatcttctttctttcttcatatatgtaga |
358 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4572041 |
aggtctcataccactaaaaggtaacaattaatcttctttctttcttcatatgtgtaga |
4571984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 4558500 - 4558139
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
4558500 |
tgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaa |
4558401 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||| ||||| | |
|
|
| T |
4558400 |
cctttccgcgaacttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgatattggcatgtcttttacca |
4558301 |
T |
|
| Q |
201 |
tacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataa |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558300 |
tacaagcttctgaagaactttcaatcccttctgttttctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataa |
4558201 |
T |
|
| Q |
301 |
aggtctcataccactacaaggtaacaattaatcttctttctttcttcatatatgtagaatag |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4558200 |
aggtctcataccactaaaaggtaacaattaatcttcttgctttcttcatatatgtagaatag |
4558139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 4587007 - 4586646
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
4587007 |
tgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaa |
4586908 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
4586907 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttatccctccagtcacttgtatagtttctgatattaccatgtcctttacta |
4586808 |
T |
|
| Q |
201 |
tacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataa |
300 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||| |||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4586807 |
tacaagctgctgaagaactttcactcccacttgttttctttaatccagccagtgcatgtatgtttttgacttgtattcattttagtacattgttggataa |
4586708 |
T |
|
| Q |
301 |
aggtctcataccactacaaggtaacaattaatcttctttctttcttcatatatgtagaatag |
362 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4586707 |
aggtctcataccactaaagggtaacaattaatcttctttctttcttcatatatgtagaatag |
4586646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 4581389 - 4581029
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| |||||||||||||||| |||| | || || ||| | ||||||| ||||||||| || ||||| ||| |||||||||| ||||| || |||||| |
|
|
| T |
4581389 |
tgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcctacaa |
4581290 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttacta |
200 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| |||| |||||||| ||||| | |
|
|
| T |
4581289 |
cctttttgtgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgataatagcatgtattttacaa |
4581190 |
T |
|
| Q |
201 |
tacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||| |||||||||| | |||| || |||| |||| || || |
|
|
| T |
4581189 |
tacaagctgctgaagaactttcaatccctgttgttttctttagtccagccagtgcatgtatgtttttgacttgttttcacttacctacactgtttgacaa |
4581090 |
T |
|
| Q |
301 |
aggtctcataccactacaaggtaa----caattaatcttctttctttcttcatatatgtag |
357 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
4581089 |
aggtgtcataccactaaaaggtaacaatcaattaatcttctttctttcttcatagatgtag |
4581029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 350
Target Start/End: Original strand, 4612508 - 4612830
Alignment:
| Q |
32 |
gatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaacctttccgcgaacttcttgctagacttaatg |
131 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||| || ||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
4612508 |
gatggtgatggtgatgttagtcaagacatatatgctctttgtgaatcaatcagaaagaacttcctacaaccttttcgcgaacttatttctagacttaatg |
4612607 |
T |
|
| Q |
132 |
actctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactatacaagctgctgaagaactttcaatccctaa |
231 |
Q |
| |
|
||||||| || ||||||||||||| ||| |||| |||||| || | |||| ||||||||| ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
4612608 |
actctgccacttctggtcttgtccctccggttacgtgcataattgctgataatagcatgtcttttaccatacaagctggtgaagaactttcaatccctgt |
4612707 |
T |
|
| Q |
232 |
tgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataaaggtctcataccactacaaggtaa----caa |
327 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||| | |||| || ||||||||| ||||||||| ||||||||||| ||||||| || |
|
|
| T |
4612708 |
tgttttctttagtccagccaatgcatgtacattttggactggttttcacttacttacattgtttgataaaggtgtcataccactaaaaggtaacgatcat |
4612807 |
T |
|
| Q |
328 |
ttaatcttctttctttcttcata |
350 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4612808 |
ttaatcttctttctttcttcata |
4612830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 4599537 - 4599216
Alignment:
| Q |
2 |
gagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaac |
101 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||||| ||||||| || ||||| | |||| |||||||||||||| || || || || |||| |
|
|
| T |
4599537 |
gagactattccagatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcctccaac |
4599438 |
T |
|
| Q |
102 |
ctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactat |
201 |
Q |
| |
|
| || |||||||||||||||||||| |||| ||| | || |||||||| ||| |||||||| |||| ||||| ||| | ||||||||||||||| |
|
|
| T |
4599437 |
catttcgcgaacttcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttagttat-gattggaacatgtcctttactat |
4599339 |
T |
|
| Q |
202 |
acaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataaa |
301 |
Q |
| |
|
||||| |||||||||||||||| | |||| |||| |||||||||||||||||||||||||||| ||||||| | | || || |||||||| || ||| |
|
|
| T |
4599338 |
acaagttgctgaagaactttcacttcctattgttctctttagtccatccaatgcatgtacattcttgacttgtttacacttaccgacattgtttgaaaaa |
4599239 |
T |
|
| Q |
302 |
ggtctcataccactacaaggtaa |
324 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
4599238 |
tgtctcataccactaaaaggtaa |
4599216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 4488950 - 4489126
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||| |||||||| ||| ||||||| ||| |
|
|
| T |
4488950 |
tgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaagatttacgcgctctttgtctatcaatcatgaacaattttcaccaa |
4489049 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttc |
177 |
Q |
| |
|
|| | | | ||||||||| ||||||||||||||| || |||||||| ||| |||||||| |||| ||||||| |
|
|
| T |
4489050 |
ttctttggtgtatttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttc |
4489126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 4623675 - 4623467
Alignment:
| Q |
8 |
attccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttcta-caacctttc |
106 |
Q |
| |
|
||||||||||||||| | |||| ||| |||||||| ||||||||||||||||| | |||||| | | ||||| ||||||||||| ||| || || || |
|
|
| T |
4623675 |
attccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaattt-ctatcatcccttt |
4623577 |
T |
|
| Q |
107 |
cgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactatacaag |
206 |
Q |
| |
|
| ||||||||||| | |||| |||||||||| || |||||||||| | ||||||| |||| ||||||| ||| | |||||| ||||| ||||||| |
|
|
| T |
4623576 |
tgtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaag |
4623477 |
T |
|
| Q |
207 |
ctgctgaaga |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
4623476 |
ctgctgaaga |
4623467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 4507276 - 4507110
Alignment:
| Q |
11 |
ccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaacctttccgcg |
110 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||||| || |||| | | || || || |||| || || ||||| ||| | | ||||| |||| |
|
|
| T |
4507276 |
ccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaatttatttacccttttcgcg |
4507177 |
T |
|
| Q |
111 |
aacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttc |
177 |
Q |
| |
|
||||||| ||||||||| |||||||||| | |||||||||||| | ||| |||| |||| ||||||| |
|
|
| T |
4507176 |
aacttctagctagacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgcttagtttc |
4507110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 4517715 - 4517498
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttcta-ca |
99 |
Q |
| |
|
||||| |||||||||||||||| |||| | || || ||||| |||||||||||||||||| | |||||| | ||||| || |||||||| ||| || |
|
|
| T |
4517715 |
tgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctctctttccgattcaataagaaagaattt-ctatca |
4517617 |
T |
|
| Q |
100 |
acctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttact |
199 |
Q |
| |
|
|| ||| | |||||||||||||||||||| || ||| | | ||||| | | | ||| ||||||||| ||||||| |||||| | || | |||||| |
|
|
| T |
4517616 |
ccccttctgtgaacttcttgctagacttaaagattcttccaatgatggtcatattcctcctgttagttgcttagtttctgatattggattgacttttact |
4517517 |
T |
|
| Q |
200 |
atacaagctgctgaagaac |
218 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4517516 |
atacaagctgctgaagaac |
4517498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4298251 - 4298468
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| ||||||||||||| | |||||||||| |||||||| ||||||| ||||||||| |||||| |||||||||| ||||| || || || |
|
|
| T |
4298251 |
tgagactattccagatggtctgactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcag |
4298350 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttacta |
200 |
Q |
| |
|
|| || | ||||||||||||| |||| ||| ||||| || |||||||||| | ||||||| |||| ||||| | ||| || ||||| ||||| | |
|
|
| T |
4298351 |
ccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttacca |
4298450 |
T |
|
| Q |
201 |
tacaagctgctgaagaac |
218 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
4298451 |
tacaagctgcggaagaac |
4298468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 345
Target Start/End: Complemental strand, 4627416 - 4627181
Alignment:
| Q |
110 |
gaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactatacaagctg |
209 |
Q |
| |
|
||||||||||||| |||| ||||||| || || |||||||||| ||||||| |||| ||||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
4627416 |
gaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccatacaagctg |
4627317 |
T |
|
| Q |
210 |
ctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgttggataaaggtctcat |
309 |
Q |
| |
|
||||||||| | || |||| | || | ||||| | | || | ||||||| | || ||| || || | || ||| ||||| |||| || |||||||| || |
|
|
| T |
4627316 |
ctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttgtctattttgcactttcgtacactgtttgaaaaaggtctaat |
4627217 |
T |
|
| Q |
310 |
accactacaaggtaacaattaatcttctttctttct |
345 |
Q |
| |
|
|||||| |||||||||||| || ||| |||||||| |
|
|
| T |
4627216 |
accactcaaaggtaacaatttatgttcattctttct |
4627181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4562037 - 4561955
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatca |
83 |
Q |
| |
|
||||| ||| |||||||||||| |||||| |||||||||||| ||| ||||||||||| | || ||||| || ||||||||| |
|
|
| T |
4562037 |
tgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatcaatca |
4561955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4618676 - 4618620
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaaga |
57 |
Q |
| |
|
|||||| ||||||||||||||| | |||| ||| |||||||| |||||||||||||| |
|
|
| T |
4618676 |
tgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaaga |
4618620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3173378 - 3173296
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatca |
83 |
Q |
| |
|
||||| ||| |||||||||||| || ||| ||| |||||||| ||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
3173378 |
tgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaatca |
3173296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4575830 - 4575748
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatca |
83 |
Q |
| |
|
||||| ||| |||||||||||| |||||| ||||||| |||| ||||| ||||||||| | || ||||| || ||||||||| |
|
|
| T |
4575830 |
tgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatca |
4575748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 16685040 - 16685408
Alignment:
| Q |
1 |
tgagagtattccagatggtttatctccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaa |
100 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || || ||| |
|
|
| T |
16685040 |
tgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaagaacttcctccaa |
16685139 |
T |
|
| Q |
101 |
cctttccgcgaacttcttgctagacttaatgactctgcaa-------catctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcc |
193 |
Q |
| |
|
|| || ||||||| ||||||||||||| ||||| |||| ||||||||||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16685140 |
ccctttcgcgaacatcttgctagacttcatgaccgtgcacggtgcatcatctggtcttgtccctccagttacttgcatagtttctgatattagcatgtct |
16685239 |
T |
|
| Q |
194 |
tttactatacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatgtacatttttgacttttattcattttagtacattgt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16685240 |
tttactatacaagctgctgaagaactttcactccctgttgttctctttaatccatcgaatgcatgtacatttttaacttttattcattttagtacattgt |
16685339 |
T |
|
| Q |
294 |
tggataaaggtctcataccactacaaggtaacaattaatcttctttctttcttcatatatgtagaatag |
362 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16685340 |
tggataaaggtctcataccactaaatggtaacaatgaatcttctttctttcttcatatatgtagaatag |
16685408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 20862666 - 20862776
Alignment:
| Q |
110 |
gaacttcttgctagacttaatgactctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactatacaagctg |
209 |
Q |
| |
|
||||||||||| | |||| |||||||| | | |||||||||| | | ||| |||| |||| ||||||| |||| | |||||| |||| ||||||| || |
|
|
| T |
20862666 |
gaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccatacaagttg |
20862765 |
T |
|
| Q |
210 |
ctgaagaactt |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
20862766 |
ctgaagaactt |
20862776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 2238 - 2423
Alignment:
| Q |
32 |
gatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcaggaagaattttctacaacctttccgcgaacttcttgctagacttaatg |
131 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||||||||||||||| || || || || || || ||||||||||||||||||||| | | |
|
|
| T |
2238 |
gatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttcacttctttcgcgaacttcttgctagacttgacg |
2337 |
T |
|
| Q |
132 |
actctgcaacatctggtcttgtccgtccagttagttgcatagtttcagatattagcatgtcctttactatacaagctgctgaagaa |
217 |
Q |
| |
|
| ||||| | ||||||||| ||| |||||| | | || ||||||| ||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
2338 |
agtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctgctgaagaa |
2423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 1282625 - 1282560
Alignment:
| Q |
193 |
ctttactatacaagctgctgaagaactttcaatccctaatgttgtctttagtccatccaatgcatg |
258 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||| ||||| |||||| | |||||| |
|
|
| T |
1282625 |
ctttactatacaagctgctgaagaatttgcactccctaatgttctcttttttccatcaagtgcatg |
1282560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University