View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_70 (Length: 384)

Name: NF1145_low_70
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_70
NF1145_low_70
[»] chr8 (1 HSPs)
chr8 (1-285)||(26608684-26608969)
[»] chr3 (8 HSPs)
chr3 (286-384)||(23140387-23140485)
chr3 (299-384)||(23039382-23039467)
chr3 (293-384)||(23024613-23024704)
chr3 (293-384)||(23149099-23149190)
chr3 (299-384)||(23036511-23036596)
chr3 (301-383)||(23146262-23146344)
chr3 (299-384)||(23017403-23017488)
chr3 (299-376)||(23033048-23033125)
[»] chr6 (1 HSPs)
chr6 (299-384)||(21780154-21780239)
[»] scaffold0554 (1 HSPs)
scaffold0554 (302-384)||(6331-6413)
[»] chr1 (1 HSPs)
chr1 (294-381)||(12637342-12637429)
[»] scaffold0059 (1 HSPs)
scaffold0059 (299-335)||(62543-62579)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 26608969 - 26608684
Alignment:
Q  1 ccttgtggtgggaacagaatgcacatgcttgcacatgtttcttgttctaagttttcaagattttggtaccattgcttcc-ttctcgtttaggcctttata 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26608969 ccttgtggtgggaacagaatgcacatgcttgcacatgtttcttgttctaagttttcaagattttggtaccattgcttcccttctcgtttaggcctttata 26608870  T
Q  100 cagtacagtccaatgagtcagattcaacttggattccaataacagaagattattataattataataataatgccctatatccaaagtaacttgaatttgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26608869 cagtacagtccaatgagtcagattcaacttggattccaataacagaagattattataattataataataatgccctatatccaaagtaacttgaatttgt 26608770  T
Q  200 caccatgtcacctctaacacttgatttgaagccatgttcctttgccacaatttgacctttatgtgccaaacaaatacttatgcctt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26608769 caccatgtcacctctaacacttgatttgaagccatgttcctttgccacaatttgacctttatgtgccaaacaaatacttgtgcctt 26608684  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 23140485 - 23140387
Alignment:
Q  286 gtgatagttattgttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23140485 gtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 23140387  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 23039467 - 23039382
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23039467 ttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaata 23039382  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 23024704 - 23024613
Alignment:
Q  293 ttattgttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||    
T  23024704 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaata 23024613  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 23149190 - 23149099
Alignment:
Q  293 ttattgttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  23149190 ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaata 23149099  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 23036596 - 23036511
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  23036596 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaata 23036511  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 23146344 - 23146262
Alignment:
Q  301 caggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaat 383  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  23146344 caggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaat 23146262  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 23017488 - 23017403
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  23017488 ttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaata 23017403  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 23033125 - 23033048
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatc 376  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||  |||||||||||| ||||    
T  23033125 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataagagatc 23033048  T

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Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 21780239 - 21780154
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21780239 ttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaata 21780154  T

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Target: scaffold0554 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 6331 - 6413
Alignment:
Q  302 aggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaata 384  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  6331 aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaata 6413  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 12637429 - 12637342
Alignment:
Q  294 tattgttcaggacatttttggtgctggaggtgaaacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 381  Q
    |||| ||||||||||  ||||||||||||||||||||||| | |  ||||||| ||||||||||| |||  |  ||||||||||||||    
T  12637429 tatttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga 12637342  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 62579 - 62543
Alignment:
Q  299 ttcaggacatttttggtgctggaggtgaaacatcagc 335  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  62579 ttcaggacatgtttggtgctggaggtgatacatcagc 62543  T

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