View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_72 (Length: 378)
Name: NF1145_low_72
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_72 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 161 - 378
Target Start/End: Original strand, 35452655 - 35452872
Alignment:
| Q |
161 |
atacacaagcgcttccaagataatgtcattttgaccccaaaattttctttatcttaatttgtgtctttagcaagaccatggttaaaagatgcacaccata |
260 |
Q |
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| T |
35452655 |
atactcaagcgcttccaagataatgacattttgaccccaaaattttcttgatctttatttgtgtctttagcaagaccatggttaaaagatgcacaacata |
35452754 |
T |
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| Q |
261 |
tattgaattagtgtctacaactgcaatcatgatcactattacatgtaaatcttagtcacactaattaatttaactactagttagccatattagatgtaaa |
360 |
Q |
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| T |
35452755 |
tattgaattagtgtctacaactgcaatcacgatcactattacatgtaaatcttagtcacactaattaatttaactactagttagccatattagatgtaaa |
35452854 |
T |
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| Q |
361 |
tctttgcctaagatttac |
378 |
Q |
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| T |
35452855 |
tctttgcctaagatttac |
35452872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 35452572 - 35452662
Alignment:
| Q |
30 |
tcttctcataaacaaaagactcaaaggattttactaccaaaaatgtttacaatgttttccaacccaaaaatctcatccaaaagatactcaa |
120 |
Q |
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| T |
35452572 |
tcttctcataaacaaaagactcaaaggattttactatcaaaaatatttacaatctttcccatcccaaaaatctcactctaaagatactcaa |
35452662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 4075662 - 4075722
Alignment:
| Q |
73 |
tgtttacaatgttttccaacccaaaaatctcatccaaaagatactcaactcttagcctctaa |
134 |
Q |
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| T |
4075662 |
tgtttacaatgtttcccaacccataaatctcatcc-aaaggcactcaactcttagcctctaa |
4075722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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