View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_75 (Length: 371)
Name: NF1145_low_75
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_75 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 97 - 371
Target Start/End: Original strand, 34987816 - 34988090
Alignment:
| Q |
97 |
gagggttaccaagagatggtgataaaggaaaaggaaatgccaacagtactgctaacgatgaaagtcttctaactatctcatttcatatcattggtaaagc |
196 |
Q |
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| T |
34987816 |
gagggttaccaagagatggtgataaaggaaaaggaaatgccaacagtactgctaacgatgaaagtcttctaactatctcatttcatatcattggtaaagc |
34987915 |
T |
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| Q |
197 |
caacaatgctgcatcaatccctccggaatcagttcaaactatctataacatggtaacagaaacaatggctgctataaaagatgcagtgtcatatcatagt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34987916 |
caacaatgctgcatcaatccctccggaatcagttcaaaccatctataacatggttacagaaacaatggctgctataaaagatgcagtgtcgtatcatagt |
34988015 |
T |
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| Q |
297 |
cgactcaacaattgggatcaagatgaagtggcaaatagcttggtagcatagtagtttagaatcatatatacattc |
371 |
Q |
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| T |
34988016 |
cgactcaacaactgggatcaagatgaagtggcaaatagcttggcagcatagtagtttagaacaatatatacattc |
34988090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 97 - 370
Target Start/End: Original strand, 34996083 - 34996357
Alignment:
| Q |
97 |
gagggttaccaagagatggtgataaaggaaaaggaaatgccaacagtactgctaacgatgaaagtcttctaactatctcatttcatatcattggtaaagc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||| || |
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| T |
34996083 |
gagggttaccaagagatggtgataaaggaaaaggaaatgccaatagtactgctaacaatgaaagtcttctaactatgtcatttcatatcattgataacgc |
34996182 |
T |
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| Q |
197 |
caacaatgctgcatcaatccctccggaatcagttcaaactatctataacatggtaacagaaacaatggctgctataaaagatgcagtgtcatatcatagt |
296 |
Q |
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|| ||||| |||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
34996183 |
cagcaatgttgcatctatcgctccggaatcagttcaaaccatctataacatcattacagaaacagttgctgctataaaagatgcagtgtcgtatcatagt |
34996282 |
T |
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| Q |
297 |
cgactcaacaattgggatcaagatgaagtggcaaatagcttggtagca-tagtagtttagaatcatatatacatt |
370 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||||||| |
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| T |
34996283 |
ctactcaacaattgggatcaagatgaagtggcaaatagcttggcagcattagtagtgtagaaccatgcatacatt |
34996357 |
T |
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