View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_76 (Length: 371)
Name: NF1145_low_76
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_76 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 77 - 360
Target Start/End: Original strand, 31765563 - 31765846
Alignment:
| Q |
77 |
gtgtacacaaattttgaaaataccacaaaaattaaagaccac-atatttgatgtcttatttttcatgttcaaacataattttctatataatatgtannnn |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31765563 |
gtgtacacaaattttgaaaataccacaaaaattaaagaccactatatttgatgtcttatttttcatgttcaaacataattttctatataatatgtatttt |
31765662 |
T |
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| Q |
176 |
nnnnnnatagatagatgaagaacaaaaagaaaatttcccttcactactaaagtcctcgatctatgtgttaaagcaatttacnnnnnnnnnnnnnnnnnnn |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31765663 |
atttttatagatagatgaagaacaaaaagaaaatttcccttcactactaaagtcctcgatctatgtgttaaagcaatttac-ttttttttttaataattt |
31765761 |
T |
|
| Q |
276 |
nnnatctaaacatgctcatcatgatcaacatcttattactttattataattgtgaatcctagtaaaagatattgtcattagtata |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31765762 |
tttatctaaacatgctcatcatgatcaacatcttattactttattataattgtgaatcctagtaaaagatattgtcattagtata |
31765846 |
T |
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