View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_77 (Length: 370)
Name: NF1145_low_77
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 54075228 - 54075553
Alignment:
| Q |
1 |
tacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaa |
100 |
Q |
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| T |
54075228 |
tacaagctctgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaa |
54075327 |
T |
|
| Q |
101 |
aacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagccca |
200 |
Q |
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| T |
54075328 |
aacatcgtggttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagccca |
54075427 |
T |
|
| Q |
201 |
aatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075428 |
aatatttcctttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatatt |
54075527 |
T |
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| Q |
301 |
gtatgataatggaagcgatgatgatg |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54075528 |
gtatgataatggaagcgatgatgatg |
54075553 |
T |
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