View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_83 (Length: 368)
Name: NF1145_low_83
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 47816313 - 47816056
Alignment:
| Q |
10 |
aagaatatattacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtg |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47816313 |
aagaaaatattacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtg |
47816214 |
T |
|
| Q |
110 |
cacttcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47816213 |
cacttcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagca |
47816114 |
T |
|
| Q |
210 |
acaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47816113 |
acaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
47816056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 47380842 - 47380585
Alignment:
| Q |
10 |
aagaatatattacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47380842 |
aagaaaatattacctgtagttcacctctagcaagagctggtttcaatatgtttgccgcatcaattgccccttcagctgctcctgctccaatgagagtgtg |
47380743 |
T |
|
| Q |
110 |
cacttcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47380742 |
cacttcatcaatgaaaagtattatttcatcactttgtttaatttcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagca |
47380643 |
T |
|
| Q |
210 |
acaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttcatgt |
267 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47380642 |
acaagtagacccatatccagggttataacctaaatcatgcagaatgaggctttcatgt |
47380585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 45112924 - 45112703
Alignment:
| Q |
20 |
tacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatca |
119 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| | |||||| | ||||||||| | ||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
45112924 |
tacctgtagttcacctcttgcaagagctggttttagtatgttagcagcatcaattgcaccttcggctgctcctgctccaattagtgtgtgcacttcatcg |
45112825 |
T |
|
| Q |
120 |
atgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagac |
219 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||| | ||| || ||||| | || |
|
|
| T |
45112824 |
ataaaaagtattatatcatcactttgtttgatttcttccatcagtttcttcaacctctcctcaaactcaccacggtatttggttccggctacaagcaaac |
45112725 |
T |
|
| Q |
220 |
ccatatctagggttataaccta |
241 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
45112724 |
ccatgtctagggttataaccta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 17718012 - 17717796
Alignment:
| Q |
50 |
tttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttg |
149 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17718012 |
tttcaatatgtttgccgcatcaattaccccttcagctgctc-tgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttg |
17717914 |
T |
|
| Q |
150 |
atttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17717913 |
atttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgc |
17717814 |
T |
|
| Q |
250 |
agaatgaggctttcatgt |
267 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17717813 |
agaatgaggctttcatgt |
17717796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 40243721 - 40243475
Alignment:
| Q |
18 |
attacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcat |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40243721 |
attacctgtagttcacctctagcaagagctggtttcaatatgtttgccgcatcaattgccccttcagctgctcctgctccaattagagtgtgcacttcat |
40243622 |
T |
|
| Q |
118 |
caatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtag |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
40243621 |
caatgaaaagtattatttcatcgctttgtttgatttcctccattagttttttcaatctttcttcaaattctccacggtatttagttccagctacaagtag |
40243522 |
T |
|
| Q |
218 |
acccatatctagggttataacctaaatcatgcagaatgaggctttca |
264 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
40243521 |
acccatatctagggttataacctgcatcatgcagaacaaggctttca |
40243475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University