View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_84 (Length: 367)
Name: NF1145_low_84
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_84 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 14144021 - 14144137
Alignment:
| Q |
167 |
acataggaaagaaatgggttctatgccccttcacagctaccacaacagtaatggtcggatggtaattaaagccaccaaaaactctcttcaagtcctccaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
14144021 |
acataggaaagaaatgggttctatgccccttcacagctaccacaacagtaatggttggatggtatttaaagccaccaaaatctctcttcaggtcctccaa |
14144120 |
T |
|
| Q |
267 |
ctccacattcaggacca |
283 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
14144121 |
ctcatcattcaggacca |
14144137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 14144600 - 14144659
Alignment:
| Q |
282 |
cagaagttgcaaccgtcttccatttattgtcttaattctactaagcaattaaccaagtga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
14144600 |
cagaagttgcaaccgtcttccatttattgtcttaattctgctaagcaattcacgaagtga |
14144659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University