View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1145_low_85 (Length: 364)
Name: NF1145_low_85
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_85 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 5621332 - 5621683
Alignment:
| Q |
1 |
aagaataaaactataaaagtctaaacatagtttatttatatgattgaatgttgttgttacttctctgcccaaactaaaaatatatctgtttagttgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5621332 |
aagaataaaactataaaagtctaaacatagtttatttatatgattgaatgttgttgttacctctctgcccaaactaaaaatatatatgtttagttgtttt |
5621431 |
T |
|
| Q |
101 |
tgtttttgactcataacaacatttaagtatataagataagaaagtcaaatcattattatgcttatacagctattgaatcattttcattcttatatctttg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5621432 |
tgtttttgactcataggaacatttaagtatataagataagaaagtcaaatcattattatgcttatacggctattgaatcattttcattcttatatctttg |
5621531 |
T |
|
| Q |
201 |
aatttgaattctcatatataattatctttgagaacttagtgttgtgaaggaaaatgaatagtaatttaacaagagaaccaggcttatatgtctcagttgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5621532 |
aatttgaattctcatatataattatctttgagaacttagtgttgtgaaggaaaatgaatagtaatataacaagagaaccaggcttatatgtctcagttgc |
5621631 |
T |
|
| Q |
301 |
acaaatagatgctacaaccttcaatgtttgttctgttgctccaccaaatatt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621632 |
acaaatagatgctacaaccttcaatgtttgttctgttgctccaccaaatatt |
5621683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 35300327 - 35299973
Alignment:
| Q |
1 |
aagaataaaactataaaagtctaaacatagtttatttatatgattgaatgttgttgtt---acttctctgcccaaactaaaaatatatctgtttagttgt |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
35300327 |
aagaatgaaactataaaagtctaaacatagtttatttataggattgaatgttgttgttgtaacttctctggccaaactaaaaatataattgtttagttgt |
35300228 |
T |
|
| Q |
98 |
ttttgtttttgactcataacaacatttaagtatataagat-----aagaaagtcaaatcattattatgcttatacagctattgaatcattttcattctta |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| ||| || |
|
|
| T |
35300227 |
ttttgtatttgactcataacaacatttaagtatataagataagataagaaactcaaatcattattatac-----------ttgaatcattttccttccta |
35300139 |
T |
|
| Q |
193 |
tatctttgaatttgaattctcatatataattatctttgagaacttagtgttgtgaaggaaaatgaatagtaatttaacaagagaaccaggcttatatgtc |
292 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
35300138 |
tatctttgaacttgaattctcatatataaatttctttaagaacttagtgttgtgaaggaaaatgaatagtaatataacaagagaaccaggtttatatgtc |
35300039 |
T |
|
| Q |
293 |
tcagttgcacaaataga------tgctacaaccttcaatgtttgttctgttgctccaccaaatatt |
352 |
Q |
| |
|
|||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35300038 |
tcagttacacaaatggatgttagtgctacagccttcaaagtttgttctgttgctccaccaaatatt |
35299973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 35282296 - 35282153
Alignment:
| Q |
1 |
aagaataaaactataaaagtctaaacatagtttatttatatgattgaatgttgttgtt---acttctctgcccaaactaaaaatatatctgtttagttgt |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
35282296 |
aagaatgaaactataaaagtctaaacatagtttatttataggattgaatgttgttgttgtaacttctcttgacaaactaaaaatataactatttagttgt |
35282197 |
T |
|
| Q |
98 |
ttttgtttttgactcataacaacatttaagtatataagataaga |
141 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35282196 |
ttttgtatttgactcataacaacatttaagtatataagataaga |
35282153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University