View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_89 (Length: 356)
Name: NF1145_low_89
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 42033770 - 42034082
Alignment:
| Q |
30 |
gtggaagcttcttcctcggtgctaatgacatgatccttctcatatcatcaactcaatttagtactattgatgttgtattgtcaatttcaaccaagaacta |
129 |
Q |
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| T |
42033770 |
gtggaagcttcttcctcggtgctaatgacatgatccttcttatatcatcaactcaatttagtaccattgatgttgtattgtcaatttcaaccaagaacta |
42033869 |
T |
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| Q |
130 |
ctagacgaatttgtgttagagtatgtgtggcaactcctattaatttac-gctaattgtaagcaattatatagaatagaaaaggcnnnnnnnnnnnnnnnn |
228 |
Q |
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| T |
42033870 |
cgagacgaatttgtgttagagtatgtgtggcaactcctattaatttactgctaattgtaagcaattatatagaatagaaaaggc---aaaaaaacaaaaa |
42033966 |
T |
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| Q |
229 |
tagcaagatgatgaaaattaatgaaatgataaagcttgcatatatcttaataaactaaattatgtctgttttaaaaatgaaattgattaggagatttggg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42033967 |
tagcaagatgatgaaaattaatgaaatgataaagcttgcatatatcttaataaactaaattatgtctgttttaaaaatgaaattgattaggagatttggg |
42034066 |
T |
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| Q |
329 |
ttttgattaggatatt |
344 |
Q |
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| T |
42034067 |
ttttgattaggatatt |
42034082 |
T |
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