View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_90 (Length: 355)

Name: NF1145_low_90
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_90
NF1145_low_90
[»] chr7 (4 HSPs)
chr7 (45-341)||(16644703-16645000)
chr7 (45-341)||(17619064-17619361)
chr7 (1-92)||(16644901-16644993)
chr7 (1-92)||(17619262-17619354)
[»] chr3 (11 HSPs)
chr3 (163-299)||(30201113-30201249)
chr3 (163-299)||(30227288-30227424)
chr3 (163-291)||(30214660-30214787)
chr3 (167-313)||(29648978-29649124)
chr3 (163-313)||(30223037-30223187)
chr3 (164-299)||(36309765-36309899)
chr3 (166-312)||(29856789-29856935)
chr3 (163-313)||(30230278-30230428)
chr3 (242-299)||(30239053-30239110)
chr3 (230-299)||(36333946-36334015)
chr3 (167-298)||(36321276-36321407)
[»] chr5 (1 HSPs)
chr5 (167-285)||(16053601-16053719)
[»] chr6 (2 HSPs)
chr6 (166-291)||(5569436-5569561)
chr6 (166-290)||(5574415-5574539)
[»] chr1 (2 HSPs)
chr1 (202-299)||(16955669-16955766)
chr1 (166-299)||(16966187-16966320)
[»] chr8 (1 HSPs)
chr8 (166-312)||(14934493-14934639)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 45 - 341
Target Start/End: Complemental strand, 16645000 - 16644703
Alignment:
Q  45 ttgtttgcacgatggcatcatgttcgagtcg-aacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 143  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16645000 ttgtttgcacgatggcatcatgttcgagtcgcaacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 16644901  T
Q  144 caaaaagggatatatcagaggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaag 243  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16644900 caaaaagggagatatcagaggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaag 16644801  T
Q  244 tgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatgggatacaatgaccgttgtccctgcaaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  16644800 tgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatgggatacaatgaccgttgtccctgcaaca 16644703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 45 - 341
Target Start/End: Complemental strand, 17619361 - 17619064
Alignment:
Q  45 ttgtttgcacgatggcatcatgttcgagtcg-aacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 143  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17619361 ttgtttgcacgatggcatcatgttcgagtcgcaacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 17619262  T
Q  144 caaaaagggatatatcagaggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaag 243  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17619261 caaaaagggagatatcagaggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaag 17619162  T
Q  244 tgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatgggatacaatgaccgttgtccctgcaaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  17619161 tgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatgggatacaatgaccgttgtccctgcaaca 17619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16644993 - 16644901
Alignment:
Q  1 cacgatggcatcatgttcgagtcg-aacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcgaacaatgaaaaagaaag 92  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16644993 cacgatggcatcatgttcgagtcgcaacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 16644901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 17619354 - 17619262
Alignment:
Q  1 cacgatggcatcatgttcgagtcg-aacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcgaacaatgaaaaagaaag 92  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17619354 cacgatggcatcatgttcgagtcgcaacaatgaaaaagaaagaaattgtttgcacgatggcatcatgttcgagtcaaacaatgaaaaagaaag 17619262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 30201113 - 30201249
Alignment:
Q  163 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 262  Q
    |||||||||||||||||| ||||||| ||| || ||| ||||||||||||||||||||| | |  |||||||||||||||||||||  | ||||||| ||    
T  30201113 ggggccaaattggcttgaacttcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcct 30201212  T
Q  263 ctatggtggaacatttgcaaggaacctctcatgtggc 299  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30201213 ctatggtggaacatttgcaaggatcctctcatgtggc 30201249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 30227288 - 30227424
Alignment:
Q  163 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 262  Q
    |||||||||||||||||| ||||||||||| ||||||  |||||||||||||||||||  | |  | || ||||||||||||||||  | ||||||| ||    
T  30227288 ggggccaaattggcttgaacttcctagagacatcacaacaaacattcttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcct 30227387  T
Q  263 ctatggtggaacatttgcaaggaacctctcatgtggc 299  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30227388 ctatagtggaacatttgcaaggatcctctcatgtggc 30227424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 30214660 - 30214787
Alignment:
Q  163 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 262  Q
    |||||||||||||||||| ||||||||||| ||||||  ||||||| ||||||| |||  | |  |||| ||||||||||||||||  | ||||||| ||    
T  30214660 ggggccaaattggcttgaacttcctagagacatcacaacaaacatt-ttcaaagacttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcct 30214758  T
Q  263 ctatggtggaacatttgcaaggaacctct 291  Q
    ||||||||||||||||||||||| |||||    
T  30214759 ctatggtggaacatttgcaaggatcctct 30214787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 29648978 - 29649124
Alignment:
Q  167 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 266  Q
    |||||||||||||| ||||| ||||| ||||||   ||||| |||||| |  || || | ||||||||||| |||| ||||| |||||| ||| ||||||    
T  29648978 ccaaattggcttgaacttccaagagacatcacaattaacatccttcaaggagttgatactgttgaaattgtaacaaatgcatgcctagtatgtcctctat 29649077  T
Q  267 ggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 313  Q
     |||||||||||| ||||| |||||||||||||  ||| ||||||||    
T  29649078 cgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatg 29649124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 30223037 - 30223187
Alignment:
Q  163 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 262  Q
    |||||||||||||||||| ||||||||||| ||||||  ||||||||| |||||||||  | ||||||||||| |||  |  |||  |   |||||| ||    
T  30223037 ggggccaaattggcttgagcttcctagagacatcacatcaaacattctccaaaggcttggtccagttgaaattctgaagaaggcacgcaatgtgtgtcct 30223136  T
Q  263 ctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 313  Q
       |||||||||||||||||||| |||||||||||||  ||| ||||||||    
T  30223137 tattggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatg 30223187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 36309899 - 36309765
Alignment:
Q  164 gggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctc 263  Q
    ||||| ||||||||||| ||||||| |||| | |||  |||||| ||||| ||||||  |||  ||||||||||||| |||||||  | ||||||| | |    
T  36309899 gggccgaattggcttgatcttcctatagatttgacagcaaacatccttcataggcttggtgcgtttgaaattgtgacgagtgcat-gcgagtgtgtccgc 36309801  T
Q  264 tatggtggaacatttgcaaggaacctctcatgtggc 299  Q
     ||||||||||||||||||||| ||||| |||||||    
T  36309800 aatggtggaacatttgcaaggatcctctaatgtggc 36309765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 29856789 - 29856935
Alignment:
Q  166 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 265  Q
    ||||||||||||||| ||||  ||||| ||||||  |||||| |||||||||||| || || ||||||| |||| ||||||||  | ||| ||| |||||    
T  29856789 gccaaattggcttgaacttctgagagaaatcacagcaaacatccttcaaaggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctcta 29856888  T
Q  266 tggtggaacatttgcaaggaacctctcatgtggccaacctttcacat 312  Q
    |||||| |||| || || || |||||| ||||||  ||| |||||||    
T  29856889 tggtgggacatatgtaaagatcctctcctgtggcgtaccattcacat 29856935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 30230278 - 30230428
Alignment:
Q  163 ggggccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgct 262  Q
    |||||||||||||||||| ||||||||||| || |||  ||||||||| |||||||||  ||  || |||||| |||||| ||||  |   |||||| ||    
T  30230278 ggggccaaattggcttgagcttcctagagacattacatcaaacattctccaaaggcttggtgtggtcgaaattttgacaaatgcacgcaatgtgtgtcct 30230377  T
Q  263 ctatggtggaacatttgcaaggaacctctcatgtggccaacctttcacatg 313  Q
       ||||||| |||||||||||| |||| ||||||||  ||| ||||||||    
T  30230378 tattggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatg 30230428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 30239053 - 30239110
Alignment:
Q  242 agtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 299  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||| |||||||||||||    
T  30239053 agtgcatgcctagtatgtcctctatggtggaacatatgcaaggatcctctcatgtggc 30239110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 36334015 - 36333946
Alignment:
Q  230 gaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 299  Q
    ||||||||||| ||||| | || ||||||| | | ||||||||||||||||||||| |||||||||||||    
T  36334015 gaaattgtgacgagtgcttgccgagtgtgtccacaatggtggaacatttgcaaggatcctctcatgtggc 36333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 36321407 - 36321276
Alignment:
Q  167 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 266  Q
    |||||||||||||| ||||| || ||| | ||| ||||||| ||||| ||||||  | |  ||||||||||||| ||||| | || ||| ||  | | ||    
T  36321407 ccaaattggcttgatcttccaagtgatttgacagaaaacatccttcagaggcttggtacgtttgaaattgtgacgagtgcttgccgagtatgcccacaat 36321308  T
Q  267 ggtggaacatttgcaaggaacctctcatgtgg 298  Q
    ||| ||||||||||||||| || |||||||||    
T  36321307 ggttgaacatttgcaaggatccactcatgtgg 36321276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 16053719 - 16053601
Alignment:
Q  167 ccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctat 266  Q
    |||||||||||||| |||||||||||| | |||  ||| || ||||| ||||||  |||| |||||||| | |||||||||| |  ||||||  |||| |    
T  16053719 ccaaattggcttgatcttcctagagatttgacatcaaatatccttcagaggcttggtgcatttgaaattttaacaagtgcatgcggagtgtgccctcttt 16053620  T
Q  267 ggtggaacatttgcaagga 285  Q
    |||||||||||||||||||    
T  16053619 ggtggaacatttgcaagga 16053601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 5569561 - 5569436
Alignment:
Q  166 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 265  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || |  ||||  | || ||||||||||  | ||||||| |||||    
T  5569561 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 5569462  T
Q  266 tggtggaacatttgcaaggaacctct 291  Q
    |||||||||||||||||||| |||||    
T  5569461 tggtggaacatttgcaaggatcctct 5569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 5574539 - 5574415
Alignment:
Q  166 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 265  Q
    ||||||||||||||  ||||| ||||| |||||    ||||| |||||||||||| || |  ||||  | || ||||||||||  | ||||||| |||||    
T  5574539 gccaaattggcttgcacttccaagagacatcacggtgaacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctcta 5574440  T
Q  266 tggtggaacatttgcaaggaacctc 290  Q
    |||||||||||||||||||| ||||    
T  5574439 tggtggaacatttgcaaggatcctc 5574415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 16955766 - 16955669
Alignment:
Q  202 aaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggc 299  Q
    ||||||||| || |||||| || |  |||||||||| ||||||| ||  | ||||||  || |||||||||| ||||||||||| |||||||||||||    
T  16955766 aaacattctccagaggcttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggc 16955669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 16966320 - 16966187
Alignment:
Q  166 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 265  Q
    ||||||||||||||| || || |||||| | |||  ||| ||||| || |||||| || |  ||||||| || ||||||| ||  | ||||||| || ||    
T  16966320 gccaaattggcttgaactacccagagatttgacaataaatattctccagaggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtccttta 16966221  T
Q  266 tggtggaacatttgcaaggaacctctcatgtggc 299  Q
    |||||||| ||||||||||| |||| ||||||||    
T  16966220 tggtggaatatttgcaaggatcctcacatgtggc 16966187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 14934639 - 14934493
Alignment:
Q  166 gccaaattggcttgaccttcctagagatatcacacaaaacattcttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctcta 265  Q
    ||||||||||||||| ||||| |||||| | ||   ||||||||| |||||||||  |||  |||||||  || | |||||||  | ||||||  ||||     
T  14934639 gccaaattggcttgaacttccaagagatgtgactgcaaacattctccaaaggcttggtgccattgaaatattggctagtgcatgtcaagtgtgccctctt 14934540  T
Q  266 tggtggaacatttgcaaggaacctctcatgtggccaacctttcacat 312  Q
    |||||||| |||| |||||| |||| ||||||||  ||| |||||||    
T  14934539 tggtggaatattttcaaggatcctcacatgtggcacaccgttcacat 14934493  T

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