View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1145_low_97 (Length: 330)

Name: NF1145_low_97
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1145_low_97
NF1145_low_97
[»] chr2 (3 HSPs)
chr2 (21-111)||(2176811-2176901)
chr2 (222-302)||(2176566-2176646)
chr2 (109-156)||(2176713-2176760)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 2176901 - 2176811
Alignment:
Q  21 actcccatggaatggaatgaaaatattctattttggctcttcatccctcttttacaattgcatttttaaaactcaatcatcattgagcatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2176901 actcccatggaatggaatgaaaatattctattttggctcttcatccctcttttacaattgcatttttaaaactcaatcatcattgaacatt 2176811  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 2176646 - 2176566
Alignment:
Q  222 gcacttgataaggaatcaatgagaatccaatttaatagcatgcagaatccagccaccaaccggtgaagataacaacaactt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2176646 gcacttgataaggaatcaatgagaatccaatttaatagcatgcagaatccagccaccaaccggtgaagataacaacaactt 2176566  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 2176760 - 2176713
Alignment:
Q  109 attctacttaaatctttggcacacttaaaattcaaaactgtctacacc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2176760 attctacttaaatctttggcacacttaaaattcaaaactgtctacacc 2176713  T

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