View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1145_low_98 (Length: 329)
Name: NF1145_low_98
Description: NF1145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1145_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 33305637 - 33305347
Alignment:
| Q |
30 |
gaattgctggtaatatgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaat |
129 |
Q |
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| T |
33305637 |
gaattgctggtaatatgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaat |
33305538 |
T |
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| Q |
130 |
ttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtattagaacaattattgatcatgtcattttg |
229 |
Q |
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| T |
33305537 |
ttcatgtgtctgcatcatgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtattagaacaattattgatcatatcattttg |
33305438 |
T |
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| Q |
230 |
ctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgacacaaaagaacaaattctgatgcctttgc |
320 |
Q |
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| T |
33305437 |
ctgaaaatgtggaggcacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgccacaaaagaacaaattctgatgcctttgc |
33305347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 45 - 318
Target Start/End: Complemental strand, 30870291 - 30870019
Alignment:
| Q |
45 |
tgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcat |
144 |
Q |
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| T |
30870291 |
tgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcaacgctttgtgctgctctgaagtgaaagataactttcctgtgtctgcat |
30870192 |
T |
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| Q |
145 |
catgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtattagaacaattattgatcatgtcattttgctgaaaatgtggagg |
244 |
Q |
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| T |
30870191 |
catgagtatcttcaccatatgcaatggaatgtgaatcaccttcttgtccagtagtgttagaacaattattgatcatgccattttgcggaaaatgag--gg |
30870094 |
T |
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| Q |
245 |
cacaccatgcttcttgaaacatgtatctatggtgtgaccacttctgacacaaaa-gaacaaattctgatgccttt |
318 |
Q |
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| T |
30870093 |
gataccatgcttcttgaaacatgtatctatggtgtgaccacttctcccacaaaaggaacaaactctgatgccttt |
30870019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 29351508 - 29351278
Alignment:
| Q |
45 |
tgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcgatgctttgtgctgctcttaagtgaaagataaatttcatgtgtctgcat |
144 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||| || | |||| || ||| ||||| |||| ||||| || || |
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| T |
29351508 |
tgatttacaatatgagaagggaatgtgtttgaattttgaagaagagctagggatgatttatgtttctctgaacagaaggataactttcttgtgtgtgtat |
29351409 |
T |
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| Q |
145 |
catgagcatcttcatcgtatgcaatagaacgtgaatcatcttcttgtccattagtattagaacaattattgatcatgtcattttgctgaaaatgtggagg |
244 |
Q |
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| T |
29351408 |
catgagtatcttcatcgtatgcaattgaa--tgaatcatcctattctccattaacattgaaacaattaatgttcataccgttttgctaaaaataaggagg |
29351311 |
T |
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| Q |
245 |
cacaccatgcttcttgaaacatgtatctatggt |
277 |
Q |
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|||||||||||| |||||||||| ||| |||| |
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| T |
29351310 |
tacaccatgcttcatgaaacatgtgtctttggt |
29351278 |
T |
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