View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11460_high_10 (Length: 414)
Name: NF11460_high_10
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11460_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 25739159 - 25739540
Alignment:
| Q |
18 |
aaatgtggaacaaaatgaattttcaagaagaagcagttcaggttatgaactcagatttcaaagacctgagtgaagttgctagcagactcgctaatcatgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25739159 |
aaatgtggaacaaaatgaattttcaagaagaagcagttcaggttatgaactcagatttcaaagacctgagtgaagttgctagcagactcgctaatcatgc |
25739258 |
T |
|
| Q |
118 |
catcaaattcgctggtataggctggggaggttctttctttggattctttgctgctgttgctgctatgtacgttgcctttaactctatctgacaccgacat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
25739259 |
catcaaattcgctggtataggctggggaggttctttctttggattctttgctgctgttgctgctatgtacgttacctttaactctatccgacaccgacat |
25739358 |
T |
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| Q |
218 |
atataattacatcgtgtcctgagtagtgcttcataggctctatctattaatttatcatcatttgccattttattcatgtctgtattaattctttcatttt |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25739359 |
atataattacatcgtgtcctgagtcgtgcttcataggctctatctattaatttatcatcatttaccattttattcatgtctgtattaattctttcatttt |
25739458 |
T |
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| Q |
318 |
ttacaactatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagt |
399 |
Q |
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| T |
25739459 |
ttacaactatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagt |
25739540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 25742719 - 25743001
Alignment:
| Q |
18 |
aaatgtggaacaaaatgaattttcaagaagaagcagttcaggttatgaactcagatttcaaagacctgagtgaagttgctagcagactcgctaatcatgc |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
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| T |
25742719 |
aaatgtggaacagaatgaattttcaagaagaagcagttcagattatgaactcagatttcaaagacctgagtgaagctgctagtaaactcgctaatcatgc |
25742818 |
T |
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| Q |
118 |
catcaaattcgctggtataggctgg---ggaggttctttctttggattctttgctgctgttgctgctatgtacgttgcctttaactctatctgacaccga |
214 |
Q |
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||||||||| |||||| ||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
25742819 |
catcaaattagctggtgtaggcggctttggagcttctttcttcggattctttgctgctgttgctgctatgtacgtt-cctttaactctatccgataccga |
25742917 |
T |
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| Q |
215 |
catatataattacatcgtgtcctgagta---------gtgcttcataggctctatctattaatttatcatcatttgccatttta |
289 |
Q |
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| T |
25742918 |
cacatataattacattgaattatacgtacttctgtctgtgcttcatagactctatctattaatttatcatcatttgcaatttta |
25743001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 25743099 - 25743150
Alignment:
| Q |
352 |
tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcat |
403 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
25743099 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcat |
25743150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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