View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11460_high_14 (Length: 269)
Name: NF11460_high_14
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11460_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 51938006 - 51937759
Alignment:
| Q |
1 |
aaacaacaacttcaatccatcaggtacgtacctacatattattatattcatgatcgatgctatatatgaattgaattaatactaattttgtgtttaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51938006 |
aaacaacaacttcaatccatcaggtacctacatat-tattattatattaatgatcgatgctatatatgaattgaattaatactaattttgtgtttaatta |
51937908 |
T |
|
| Q |
101 |
ataatggatcgatcagtgaatcgttggcgtcgttgacaagggagacaggacctaaggtggtgaaaggagacccagccagcaaagggagtagttcacacgt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51937907 |
ataatggatc----agtgaatcgttggcgtcgttgacaagggagacaggacctaaggtggtgaaaggagacccagccagcaaagggagtagttcacacgt |
51937812 |
T |
|
| Q |
201 |
ggatcatcaccagcatagtcctcttatttcaacagcatttgatgttagtgata |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51937811 |
ggatcatcaccagcatagtcctcttatttcaacagcatttgatgttagtgata |
51937759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University