View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_high_7 (Length: 459)

Name: NF11460_high_7
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_high_7
NF11460_high_7
[»] chr2 (4 HSPs)
chr2 (189-439)||(41847021-41847269)
chr2 (142-186)||(31204215-31204260)
chr2 (142-186)||(31184494-31184538)
chr2 (147-186)||(31173381-31173421)
[»] chr5 (3 HSPs)
chr5 (146-188)||(27808554-27808597)
chr5 (142-187)||(11822238-11822284)
chr5 (142-187)||(27809799-27809845)
[»] chr8 (3 HSPs)
chr8 (142-187)||(23231336-23231382)
chr8 (142-186)||(45120759-45120804)
chr8 (142-187)||(17443371-17443417)
[»] chr1 (1 HSPs)
chr1 (147-186)||(18883847-18883887)
[»] chr6 (1 HSPs)
chr6 (142-187)||(31860743-31860789)
[»] chr4 (2 HSPs)
chr4 (142-187)||(1593859-1593905)
chr4 (142-187)||(2333859-2333905)
[»] chr3 (2 HSPs)
chr3 (142-187)||(51545240-51545286)
chr3 (147-186)||(24398591-24398631)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 189 - 439
Target Start/End: Complemental strand, 41847269 - 41847021
Alignment:
Q  189 gataaataaccccacaaatcacttttcagcagattttatcttgactcatttgcttcttcataaacttctcaggaaatcatttctcagacttaagctttta 288  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41847269 gataaataaccc-acaaatcacttttcagcagattt-atcttcactcatttgcttcttcgtaaacttctcaggaaatcatttctcagacttaagctttta 41847172  T
Q  289 aattatgaactcttgaagnnnnnnnnnggtgcattttgttggtattagaagtgctaatcaattccttttagctatcgttagctaaatatctcattcccat 388  Q
    ||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41847171 aattatgaactcttgaagaaacaaaaatgtgcattttgttggtattagaagtgctaatcaattccttttagctatctttagctaaatatctcattcccat 41847072  T
Q  389 cagaacttttaacaatctttaattaaacatctcattcatatattgtctgtg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41847071 cagaacttttaacaatctttaattaaacatctcattcatatattgtctgtg 41847021  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 31204215 - 31204260
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  31204215 ttacttgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 31204260  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 31184494 - 31184538
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaacaattttc 186  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||    
T  31184494 ttacttgtgtcattgtgaacttttgtatgtcaaaaagcaattttc 31184538  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 31173421 - 31173381
Alignment:
Q  147 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 186  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  31173421 tgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 31173381  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 27808597 - 27808554
Alignment:
Q  146 ttgtgtcattgtgaacttttgtatgtcagaaaa-caattttctc 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  27808597 ttgtgtcattgtgaacttttgtatgtcagaaaagcaattttctc 27808554  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 11822238 - 11822284
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  11822238 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 11822284  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 27809799 - 27809845
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||||    
T  27809799 ttacttgtgtcattgtgtacttttgtatgtgagaaaatcaattttct 27809845  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 23231336 - 23231382
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcag-aaaacaattttct 187  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  23231336 ttacttgtgtcattgtgaacttttctatgtcagaaaaacaattttct 23231382  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 45120759 - 45120804
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 186  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  45120759 ttacttgtgtcattgtgaacttttctatgtcagaaaagcaattttc 45120804  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 17443371 - 17443417
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcag-aaaacaattttct 187  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||    
T  17443371 ttacttgtgtcattgtgaagttttctatgtcagaaaaacaattttct 17443417  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 18883887 - 18883847
Alignment:
Q  147 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 186  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  18883887 tgtgtcattgtgaacttttgtatgtcagaaaagcaattttc 18883847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 31860743 - 31860789
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  31860743 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 31860789  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 1593859 - 1593905
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  1593859 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 1593905  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 2333859 - 2333905
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  2333859 ttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttct 2333905  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 51545286 - 51545240
Alignment:
Q  142 ttacttgtgtcattgtgaacttttgtatgtcagaaaa-caattttct 187  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||    
T  51545286 ttacttgtgtcattgtgaagttttctatgtcagaaaagcaattttct 51545240  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 24398591 - 24398631
Alignment:
Q  147 tgtgtcattgtgaacttttgtatgtcagaaaa-caattttc 186  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  24398591 tgtgtcattgtgaacttttgtatgttagaaaagcaattttc 24398631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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