View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_high_8 (Length: 458)

Name: NF11460_high_8
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_high_8
NF11460_high_8
[»] chr5 (7 HSPs)
chr5 (16-394)||(37301952-37302336)
chr5 (88-379)||(21605046-21605336)
chr5 (221-379)||(36991048-36991206)
chr5 (80-153)||(10180430-10180503)
chr5 (85-132)||(11381254-11381301)
chr5 (90-132)||(36990874-36990916)
chr5 (94-186)||(11386776-11386869)
[»] chr4 (19 HSPs)
chr4 (82-394)||(34737763-34738075)
chr4 (82-394)||(21802762-21803074)
chr4 (88-379)||(53830484-53830779)
chr4 (92-394)||(21632733-21633036)
chr4 (151-394)||(5430644-5430891)
chr4 (163-386)||(2500616-2500839)
chr4 (221-379)||(2504980-2505138)
chr4 (221-379)||(46092308-46092466)
chr4 (221-379)||(46134833-46134991)
chr4 (184-386)||(20036251-20036453)
chr4 (90-156)||(51868294-51868360)
chr4 (243-302)||(43943461-43943520)
chr4 (95-156)||(27256579-27256640)
chr4 (80-132)||(26376839-26376891)
chr4 (88-138)||(2505250-2505300)
chr4 (94-186)||(26382345-26382438)
chr4 (82-140)||(43942121-43942179)
chr4 (21-82)||(36833579-36833640)
chr4 (92-132)||(46140661-46140701)
[»] chr8 (14 HSPs)
chr8 (97-394)||(8150455-8150752)
chr8 (80-394)||(10186218-10186532)
chr8 (84-380)||(4138185-4138488)
chr8 (82-394)||(20171822-20172136)
chr8 (80-291)||(11428184-11428397)
chr8 (295-360)||(918953-919018)
chr8 (318-394)||(11428106-11428182)
chr8 (85-156)||(14597489-14597560)
chr8 (80-119)||(21566234-21566273)
chr8 (80-139)||(28841593-28841652)
chr8 (80-138)||(12274204-12274262)
chr8 (91-139)||(32663981-32664029)
chr8 (82-132)||(31686149-31686199)
chr8 (92-132)||(9083154-9083194)
[»] chr3 (17 HSPs)
chr3 (88-379)||(35870215-35870506)
chr3 (80-379)||(48266131-48266427)
chr3 (88-351)||(26215155-26215420)
chr3 (221-379)||(52349731-52349889)
chr3 (80-156)||(33519206-33519282)
chr3 (80-138)||(52349549-52349607)
chr3 (334-394)||(26215432-26215492)
chr3 (242-302)||(54945777-54945837)
chr3 (243-302)||(5884423-5884482)
chr3 (88-139)||(3744470-3744521)
chr3 (92-142)||(10176719-10176769)
chr3 (82-138)||(346601-346657)
chr3 (80-158)||(54949208-54949286)
chr3 (82-158)||(10179363-10179439)
chr3 (19-82)||(49628492-49628555)
chr3 (92-140)||(5885643-5885691)
chr3 (83-119)||(39822133-39822169)
[»] chr7 (14 HSPs)
chr7 (88-379)||(47233801-47234091)
chr7 (82-394)||(44393532-44393846)
chr7 (221-379)||(5768043-5768201)
chr7 (221-379)||(25419554-25419712)
chr7 (221-379)||(39066849-39067007)
chr7 (88-156)||(39063933-39064001)
chr7 (81-139)||(39073319-39073377)
chr7 (80-132)||(5768333-5768385)
chr7 (242-302)||(47932975-47933035)
chr7 (85-138)||(25419824-25419877)
chr7 (90-138)||(39067132-39067180)
chr7 (80-139)||(17026561-17026620)
chr7 (80-158)||(47936407-47936485)
chr7 (88-141)||(47140366-47140419)
[»] chr2 (12 HSPs)
chr2 (95-379)||(41646687-41646969)
chr2 (221-379)||(7574070-7574228)
chr2 (221-379)||(16668665-16668823)
chr2 (295-360)||(43564238-43564303)
chr2 (295-360)||(29455448-29455513)
chr2 (79-138)||(7574352-7574411)
chr2 (80-138)||(16668935-16668993)
chr2 (81-139)||(22990028-22990086)
chr2 (84-142)||(37904091-37904149)
chr2 (80-139)||(37777725-37777784)
chr2 (88-141)||(29752914-29752967)
chr2 (92-132)||(6414358-6414398)
[»] scaffold0516 (1 HSPs)
scaffold0516 (97-394)||(3127-3425)
[»] chr1 (11 HSPs)
chr1 (147-394)||(22912492-22912739)
chr1 (221-379)||(13786234-13786392)
chr1 (221-379)||(25807751-25807909)
chr1 (151-394)||(23725991-23726231)
chr1 (79-138)||(13786051-13786110)
chr1 (88-138)||(25808033-25808083)
chr1 (88-139)||(39621645-39621696)
chr1 (80-141)||(29679040-29679101)
chr1 (19-67)||(4528615-4528663)
chr1 (19-56)||(632368-632405)
chr1 (87-135)||(22909497-22909545)
[»] chr6 (8 HSPs)
chr6 (221-379)||(13433432-13433590)
chr6 (312-394)||(16712075-16712155)
chr6 (80-156)||(18877353-18877431)
chr6 (80-138)||(13433714-13433772)
chr6 (243-302)||(16857231-16857290)
chr6 (243-302)||(26615320-26615381)
chr6 (243-302)||(26721248-26721309)
chr6 (84-142)||(8643578-8643636)
[»] scaffold0316 (1 HSPs)
scaffold0316 (84-140)||(5493-5549)
[»] scaffold0045 (1 HSPs)
scaffold0045 (80-132)||(1376-1428)
[»] scaffold0182 (1 HSPs)
scaffold0182 (243-302)||(10171-10230)
[»] scaffold0061 (1 HSPs)
scaffold0061 (80-139)||(46384-46443)
[»] scaffold0017 (1 HSPs)
scaffold0017 (80-139)||(152344-152403)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 37302336 - 37301952
Alignment:
Q  16 ataaattcaatgttaaaaatggaatgattttttaagagttgtttcgttgaagcgaatgagtgtttatctatctat----a--tatacatgtattctaacc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    |  ||||||||||||||||||    
T  37302336 ataaattcaatgttaaaaatggaatgattttttaagagttgtttcgttgaagcgaatgagtgcttatctatctatctatatatatacatgtattctaacc 37302237  T
Q  110 tacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctcttttgttcttgattctttactagc 209  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302236 tacattttgcatatgtgtcaccttaccaatgacttcctttctaactaatctcttatacttatgccatgtggatctcttttgttcttgattctttactagc 37302137  T
Q  210 cattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccatttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302136 cattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccatttt 37302037  T
Q  310 attaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302036 attaataatggagggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 37301952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 88 - 379
Target Start/End: Complemental strand, 21605336 - 21605046
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctctt 187  Q
    |||||||| || |||||||| ||||||||| | ||||||||||||||||||| ||  | |||||||||||||||| ||||||||| ||||||| | ||||    
T  21605336 tatatatatatatattctaagctacatttttcctatgtgtcaccttaccaataccccc-tttctaactaatctctcatacttatgtcatgtggctatctt 21605238  T
Q  188 ttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaa 287  Q
    ||||||||||||||||| ||| |||||| ||| ||||||||||||||| ||||    |||||||||||| ||||||||||||||||||||||||||||||    
T  21605237 ttgttcttgattctttattagtcattccttactatctatctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaa 21605138  T
Q  288 tgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21605137 tgaatgcattataatccattttattaatattgaggggttaaattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 21605046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 36991048 - 36991206
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  36991048 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaatattga 36991147  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36991148 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 36991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 10180430 - 10180503
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaa 153  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||||||    
T  10180430 tatctatctatatatacatgtattctaacctacattttgcttatgtgtcacctcaccaatgcctccctttctaa 10180503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 11381254 - 11381301
Alignment:
Q  85 atctatatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11381254 atctatatatacatgtattctaacctacattttgcctatgtgtaacct 11381301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 36990874 - 36990916
Alignment:
Q  90 tatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  36990874 tatatacatgtattctaacctacatttttcctatgtgtcacct 36990916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 11386776 - 11386869
Alignment:
Q  94 tacatgtattctaacctacattttgcatatgtgtcaccttaccaatgc-cttcatttctaactaatctcttatacttatgccatgtggatctct 186  Q
    |||||||||||||| ||||||||| | ||  |||||||| |||||  | || | ||| |||| ||||||| ||||||||||||||||| |||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 82 - 394
Target Start/End: Complemental strand, 34738075 - 34737763
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtgga 181  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  34738075 tctatctctatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttatgccatgtgga 34737976  T
Q  182 tctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagtt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  34737975 tctcttttgttcttgattctttactagccattccgtacaatctatctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagtt 34737876  T
Q  282 acacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttact 381  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  34737875 acacaatgaatgcattataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaagtttact 34737776  T
Q  382 ataaaactcctca 394  Q
    ||||| |||||||    
T  34737775 ataaagctcctca 34737763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 82 - 394
Target Start/End: Original strand, 21802762 - 21803074
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtgga 181  Q
    ||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||  | |||||||||||||||| |||||||||||| ||||     
T  21802762 tctatctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggc 21802861  T
Q  182 tctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagtt 281  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||| ||||||||||| | ||||||||||||||| ||||||||    
T  21802862 tctcttttgttcttgattctttactagccattcattactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagtt 21802961  T
Q  282 acacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttact 381  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  21802962 acacaatgaatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaataatcttacacacacaagtttact 21803061  T
Q  382 ataaaactcctca 394  Q
    ||||| |||||||    
T  21803062 ataaagctcctca 21803074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 88 - 379
Target Start/End: Complemental strand, 53830779 - 53830484
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctctt 187  Q
    |||||||| || |||||||| ||||||||| | |||||||||||||||| |||||  | ||| |||||||||||| ||||||||||||||||| | ||||    
T  53830779 tatatatatatatattctaagctacatttttcctatgtgtcaccttaccgatgcccccctttttaactaatctctcatacttatgccatgtggctatctt 53830680  T
Q  188 ttgttcttgattctttactagccattccgta----caatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttac 283  Q
    ||||||||||||||||||||||| |||| ||    | ||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||    
T  53830679 ttgttcttgattctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttac 53830580  T
Q  284 acaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53830579 acaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 53830484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 92 - 394
Target Start/End: Complemental strand, 21633036 - 21632733
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctcttttgt 191  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| ||  | |||||||||||||||| |||||||||||| ||||  |||||||||    
T  21633036 tatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttctaactaatctctcatacttatgccaagtggcgctcttttgt 21632937  T
Q  192 tcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgc-aaaaacactccatttacttcacttcatgcaagttacacaatga 290  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| | |||| |||| ||||||| | ||||||||||||||| |||||||||||| ||||    
T  21632936 tcttgattctttactagccattccttactatctatctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatga 21632837  T
Q  291 atgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactc 390  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||    
T  21632836 atgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttcttacacacacaagtttactataaagctc 21632737  T
Q  391 ctca 394  Q
    ||||    
T  21632736 ctca 21632733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 151 - 394
Target Start/End: Original strand, 5430644 - 5430891
Alignment:
Q  151 taactaatctcttatacttatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaa 249  Q
    |||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||| ||    
T  5430644 taactaatttttcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 5430743  T
Q  250 aaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataa---tgaggggttacattttaaaattattcata 346  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  5430744 aaactctccatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaataatagtgaggggttacattttaaaattattcata 5430843  T
Q  347 ttcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||    
T  5430844 ttcttagtcaatcatcttacacacacaagtttactataaaactcctca 5430891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 163 - 386
Target Start/End: Complemental strand, 2500839 - 2500616
Alignment:
Q  163 tatacttatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccattt 262  Q
    |||||||||||||||||| |||||||||||||||||||  |||||  |||||| ||| || ||||||||||||||||||  ||||||||| || ||||||    
T  2500839 tatacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactatttatctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  263 acttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccac 362  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||  ||||||| |||||||| |    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctc 2500640  T
Q  363 ttacacacacaagtttactataaa 386  Q
    ||||||||||||||||||||||||    
T  2500639 ttacacacacaagtttactataaa 2500616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 2505138 - 2504980
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2505138 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 2505039  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  2505038 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaattta 2504980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 46092308 - 46092466
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||  || |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46092308 atctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 46092407  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46092408 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 46092466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 46134833 - 46134991
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||  || |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46134833 atctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 46134932  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46134933 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 46134991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 20036251 - 20036453
Alignment:
Q  184 tcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaa-cactccatttacttcacttcatgcaagtta 282  Q
    |||||||||||| |||||||||||| |||||  ||| ||||||||||||||||||||||  || ||||| |||| || |||||||||||||||||||||     
T  20036251 tcttttgttctt-attctttactagtcattcattactatctatctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagttg 20036349  T
Q  283 cacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttacta 382  Q
    || ||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||    
T  20036350 cataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagtttacta 20036449  T
Q  383 taaa 386  Q
    ||||    
T  20036450 taaa 20036453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 51868294 - 51868360
Alignment:
Q  90 tatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||  | ||||||||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcaccttaccaatgcccccctttctaacta 51868360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 43943461 - 43943520
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  43943461 tttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 43943520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 27256579 - 27256640
Alignment:
Q  95 acatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||  | ||||||||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaatgcccccctttctaacta 27256640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 26376839 - 26376891
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  26376839 tatctatctatatatacatgtattctaacctacattttacctatgtgtaacct 26376891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 2505300 - 2505250
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  2505300 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 2505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 26382345 - 26382438
Alignment:
Q  94 tacatgtattctaacctacattttgcatatgtgtcaccttaccaatgc-cttcatttctaactaatctcttatacttatgccatgtggatctct 186  Q
    |||||||||||||| ||||||||| | ||  |||||||| ||||| || || | ||| |||| ||||||| ||||||||||||||||| |||||    
T  26382345 tacatgtattctaagctacattttccttacatgtcacctcaccaaagctctccctttgtaaccaatctctcatacttatgccatgtggctctct 26382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 43942121 - 43942179
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatg 140  Q
    ||||||| |||||||||||||||||| ||||||||||| ||  |||||| | |||||||    
T  43942121 tctatctctatatacatgtattctaatctacattttgcttacatgtcacttcaccaatg 43942179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 36833640 - 36833579
Alignment:
Q  21 ttcaatgttaaaaatggaatgattttttaagagttgtttcgttgaagcgaatgagtgtttat 82  Q
    |||||||||| ||||||| ||||||||||||||||| |  |||| ||  |||||||||||||    
T  36833640 ttcaatgttacaaatggagtgattttttaagagttgctaggttggagtaaatgagtgtttat 36833579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 46140701 - 46140661
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  46140701 tatacatgtattctaacctacattttacctatgtgtaacct 46140661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 97 - 394
Target Start/End: Complemental strand, 8150752 - 8150455
Alignment:
Q  97 atgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctcttttgttcttg 196  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||  || ||||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtgactcacttttgttcttg 8150653  T
Q  197 attctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcat 296  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8150652 attctttactagccatttcttactatctatctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgcat 8150553  T
Q  297 tataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  8150552 tataatcaattttattaatattgaggggttacattttaaaattattcatattcttaatcagtcctcttacacacacaagtttactataaagctcctca 8150455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 80 - 394
Target Start/End: Original strand, 10186218 - 10186532
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtg 179  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||  | |||||||||||| |||  ||||||||||| |||    
T  10186218 tatctatctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatatctcttacttatgccaagtg 10186317  T
Q  180 gatctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaag 279  Q
      ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||    
T  10186318 actctcttttgttcttgattctttactagtcattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaag 10186417  T
Q  280 ttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10186418 ttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagttta 10186517  T
Q  380 ctataaaactcctca 394  Q
    ||||||| |||||||    
T  10186518 ctataaagctcctca 10186532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 84 - 380
Target Start/End: Original strand, 4138185 - 4138488
Alignment:
Q  84 tatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatc 183  Q
    ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||  | |||||||||||||||| |||||||||||| |||| ||    
T  4138185 tatctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggctc 4138284  T
Q  184 tcttttgttcttgattctttactagccattccgtacaatctatct-------ttcatttcccatcatttgcaaaaacactccatttacttcacttcatgc 276  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||       ||||||||| |||  ||||||||||| | ||||||||||||||| |||    
T  4138285 tcttttgttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgc 4138384  T
Q  277 aagttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagt 376  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||  | |||||||||||||||    
T  4138385 aagttacacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaagactcttacacacacaagt 4138484  T
Q  377 ttac 380  Q
    ||||    
T  4138485 ttac 4138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 82 - 394
Target Start/End: Original strand, 20171822 - 20172136
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttc-taactaatctcttatacttatgccatgtgg 180  Q
    ||||||| |||||| ||||||| ||| ||||||||||| |||||||||| | || |||   ||| |||  |||||||| | ||||||||||| |||||||    
T  20171822 tctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtgg 20171921  T
Q  181 atctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaag 279  Q
     ||||||||||||||||||||||||||| |||| | ||| ||||| ||||||||||||||||| ||| |||||| ||| ||||||||||||||||| |||    
T  20171922 ctctcttttgttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaag 20172021  T
Q  280 ttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  20172022 ttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagttta 20172121  T
Q  380 ctataaaactcctca 394  Q
    ||||||| |||||||    
T  20172122 ctataaagctcctca 20172136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 80 - 291
Target Start/End: Complemental strand, 11428397 - 11428184
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttc-taactaatctcttatacttatgccatgt 178  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |||   | | |||  |||||||| | | ||||||||||| |||    
T  11428397 tatctatctatatatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgt 11428298  T
Q  179 ggatctcttttgttcttgattctttactagccattccgtacaatct-atctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgca 277  Q
    || |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||| ||| ||||||  |||||||||||||||||||| |    
T  11428297 ggctctcttttgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatgga 11428198  T
Q  278 agttacacaatgaa 291  Q
    ||||||||||||||    
T  11428197 agttacacaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 919018 - 918953
Alignment:
Q  295 attataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatcc 360  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  919018 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 11428182 - 11428106
Alignment:
Q  318 tgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |||||||| ||||| |||||||    
T  11428182 tgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagtttacgataaagctcctca 11428106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 14597560 - 14597489
Alignment:
Q  85 atctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    |||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||  | ||||||||||    
T  14597560 atctctatatacatgtattctaagctacattttgcctatatgtcaccttaccaattcccccctttctaacta 14597489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 21566273 - 21566234
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgc 119  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21566273 tatctatctatatatacatgtattctaacctacactttgc 21566234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 28841593 - 28841652
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    |||||||||||| ||||||||||||||| ||| | ||||| |||||||||||| ||||||    
T  28841593 tatctatctatagatacatgtattctaagctatactttgcttatgtgtcacctcaccaat 28841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 12274204 - 12274262
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    ||||||||||||||||||||||| ||||  |||||||||  |||||||||||| |||||    
T  12274204 tatctatctatatatacatgtatgctaagttacattttgtttatgtgtcacctcaccaa 12274262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 32663981 - 32664029
Alignment:
Q  91 atatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    ||||||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaat 32664029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 31686149 - 31686199
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    ||||||| | |||||||||||||||| |||||| |||| ||||||||||||    
T  31686149 tctatctctgtatacatgtattctaaactacatattgcttatgtgtcacct 31686199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 9083194 - 9083154
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacct 9083154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 88 - 379
Target Start/End: Original strand, 35870215 - 35870506
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctctt 187  Q
    |||||||| || |||||||| |||||||||   ||||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||| | ||||    
T  35870215 tatatatatatatattctaagctacattttttctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtggctatctt 35870314  T
Q  188 ttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaa 287  Q
    || |||||||||||||||||| |||||| ||| ||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  35870315 ttcttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaa 35870414  T
Q  288 tgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35870415 tgaatgcattataatccattttattaatattgagaggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 35870506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 80 - 379
Target Start/End: Original strand, 48266131 - 48266427
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtg 179  Q
    ||||||||||||| || || |||||||| || |||||| | |||||||||||||| | |||||  | |||||||||||||||  ||||||||| ||||||    
T  48266131 tatctatctatatttatatatattctaagcttcatttttcttatgtgtcaccttatctatgcccccctttctaactaatctc--atacttatgtcatgtg 48266228  T
Q  180 gatctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaag 279  Q
    | | |||||| |||||||||||||||||| |||||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||    
T  48266229 gctatcttttcttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcaaaaactctccatttactt-acttcatgcaag 48266327  T
Q  280 ttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48266328 ttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 48266427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 88 - 351
Target Start/End: Original strand, 26215155 - 26215420
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttc-taactaatctcttatacttatgccatgtggatctct 186  Q
    |||||||||||||||||||| ||||||||| | ||||||| || | |||||||  | | |||  |||||||||||| ||||||||||||||||| |||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctct 26215254  T
Q  187 tttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacac 285  Q
    ||||||||||||||||| ||||||||||| ||| ||||| |||||||||| |||||| ||| |||||| ||||||||||||||||||||| |||||||||    
T  26215255 tttgttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacac 26215354  T
Q  286 aatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattctt 351  Q
    ||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26215355 aatgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 52349731 - 52349889
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52349731 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 52349830  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  52349831 ggggttacattttaaaattatttatattcttaatcaatcctcttacacacacaaattta 52349889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 33519282 - 33519206
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||| | ||||||||||    
T  33519282 tatctatctatatatacatgtattctaacctacatattgcttatgtgtcatcttactaatgcctccctttctaacta 33519206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 52349549 - 52349607
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  52349549 tatctatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 52349607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 26215432 - 26215492
Alignment:
Q  334 aaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagtttactataaagctcctca 26215492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 54945837 - 54945777
Alignment:
Q  242 atttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    |||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  54945837 atttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 54945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 5884482 - 5884423
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  5884482 tttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 5884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 3744521 - 3744470
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaat 3744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 10176769 - 10176719
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcc 142  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  10176769 tatacatgtattctaaactacatttttcctatgtgtcaccttaccaatgcc 10176719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 346601 - 346657
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||||||| || |||||    
T  346601 tctatctctatatacatgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 54949286 - 54949208
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaat 158  Q
    |||||||||||||||||||||||||||| ||||| ||| | ||  |||||||  |||||||||  | ||||||||||||    
T  54949286 tatctatctatatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaat 54949208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 10179439 - 10179363
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaat 158  Q
    ||||||| |||||||||||||||||| ||||| ||||| ||  |||||||  |||||||||  | ||||||||||||    
T  10179439 tctatctctatatacatgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaat 10179363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 49628555 - 49628492
Alignment:
Q  19 aattcaatgttaaaaatggaatgattttttaagagttgtttcgttgaagcgaatgagtgtttat 82  Q
    |||||||||||||||||| | |||||||||||||||| || ||||  ||  |||||||||||||    
T  49628555 aattcaatgttaaaaatgaagtgattttttaagagttattccgtttgaggaaatgagtgtttat 49628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 5885691 - 5885643
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcaccttaccaatg 140  Q
    |||||||||||||||||||||||||||| ||  |||||| | |||||||    
T  5885691 tatacatgtattctaacctacattttgcttacatgtcacttcaccaatg 5885643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 39822169 - 39822133
Alignment:
Q  83 ctatctatatatacatgtattctaacctacattttgc 119  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  39822169 ctatctatatatacatgtattctaagctacactttgc 39822133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 88 - 379
Target Start/End: Complemental strand, 47234091 - 47233801
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaatctcttatacttatgccatgtggatctctt 187  Q
    |||||||| || |||||||| ||| ||||| | |||||||||| |||||||||||  | |||||||||||||||| ||||||||| ||||||| | ||||    
T  47234091 tatatatatatatattctaaactatatttttcctatgtgtcactttaccaatgccccc-tttctaactaatctctcatacttatgtcatgtggctatctt 47233993  T
Q  188 ttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaa 287  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  47233992 ttgttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaa 47233893  T
Q  288 tgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47233892 tgaatgcattataatccattttattaatattaaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 47233801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 82 - 394
Target Start/End: Original strand, 44393532 - 44393846
Alignment:
Q  82 tctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttc-taactaatctcttatacttatgccatgtgg 180  Q
    ||||||| |||||| ||||||| ||| ||||||||||| |||||||||| | || |||   ||| |||  |||||||| | ||||||||||| |||||||    
T  44393532 tctatctctatatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtgg 44393631  T
Q  181 atctcttttgttcttgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaag 279  Q
     ||||||||||||||||||||||||||| |||| | ||| ||||| ||||||||||||||||| ||| |||||| ||| ||||||||||||||||| |||    
T  44393632 ctctcttttgttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaag 44393731  T
Q  280 ttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  44393732 ttacacaatgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagttta 44393831  T
Q  380 ctataaaactcctca 394  Q
    ||||||| |||||||    
T  44393832 ctataaagctcctca 44393846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 5768201 - 5768043
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  5768201 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaatattga 5768102  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5768101 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 5768043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 25419712 - 25419554
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25419712 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 25419613  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  25419612 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaattta 25419554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 39067007 - 39066849
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39067007 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 39066908  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  39066907 ggggttacattttaaaattattcatattcttaatcaatcctcttacacatacaagttta 39066849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 39064001 - 39063933
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtcatcttaccaatgcctccctttctaacta 39063933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 39073377 - 39073319
Alignment:
Q  81 atctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  39073377 atctatctatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaat 39073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 5768385 - 5768333
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5768385 tatctatctatatatacatgtattctaacctacatttttcctatgtgtcacct 5768333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 47933035 - 47932975
Alignment:
Q  242 atttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    |||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  47933035 atttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 47932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 25419877 - 25419824
Alignment:
Q  85 atctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  25419877 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 39067180 - 39067132
Alignment:
Q  90 tatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||    
T  39067180 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 39067132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 17026561 - 17026620
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    ||||||| |||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  17026561 tatctatatatacatacatgtattctaagctacactttgcttatgtgtcacctcaccaat 17026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 47936485 - 47936407
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaactaat 158  Q
    |||||||||||||||||||||||||||| ||||| ||| | ||  |||||||  |||||||||  | ||||||||||||    
T  47936485 tatctatctatatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaat 47936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 47140366 - 47140419
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgc 141  Q
    |||||||| || |||||||| ||||| ||||| |||||||||||| ||||||||    
T  47140366 tatatatatatatattctaaactacactttgcttatgtgtcacctcaccaatgc 47140419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 95 - 379
Target Start/End: Complemental strand, 41646969 - 41646687
Alignment:
Q  95 acatgtattctaacctacattttgcatatgtgtcaccttaccaatg-ccttcatttctaactaatctcttatacttatgccatgtggatctcttttgttc 193  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||||| ||  | ||| |||||||||||| ||||||||||||||||| | ||||||||||    
T  41646969 acatgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatcttttgttc 41646870  T
Q  194 ttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatg 293  Q
    |||||||||||||||||||||| |||    |||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41646869 ttgattctttactagccattccttact---tatctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatg 41646773  T
Q  294 cattataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
     ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41646772 tattttaatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 41646687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 7574228 - 7574070
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7574228 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 7574129  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  7574128 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaattta 7574070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 16668823 - 16668665
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  16668823 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaatattga 16668724  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  16668723 ggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaaattta 16668665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 43564238 - 43564303
Alignment:
Q  295 attataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatcc 360  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43564238 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcc 43564303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 29455448 - 29455513
Alignment:
Q  295 attataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatcc 360  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  29455448 attataatccattttattaatatcgaggggttacattttaaaattattcatattcttaattaatcc 29455513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 7574411 - 7574352
Alignment:
Q  79 ttatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  7574411 ttatctatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 7574352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 16668993 - 16668935
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  16668993 tatctatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 16668935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 22990086 - 22990028
Alignment:
Q  81 atctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  22990086 atctatctatatatacatgtattctaacgtacattttgcttatgtgtcacctcaccaat 22990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 37904149 - 37904091
Alignment:
Q  84 tatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcc 142  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||    
T  37904149 tatctatatatacatgtattctaagctacatttttcctatgtgtcacctcaccaatgcc 37904091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 37777725 - 37777784
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    |||||||||||||||||||||||||||||||||| ||||| ||  |||||||| ||||||    
T  37777725 tatctatctatatatacatgtattctaacctacactttgcttacatgtcacctcaccaat 37777784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 29752914 - 29752967
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgc 141  Q
    |||||||| || |||||||| ||||| ||||| |||||||||||| ||||||||    
T  29752914 tatatatatatatattctaaactacactttgcttatgtgtcacctcaccaatgc 29752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 6414398 - 6414358
Alignment:
Q  92 tatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacct 6414358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 97 - 394
Target Start/End: Original strand, 3127 - 3425
Alignment:
Q  97 atgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttc-taactaatctcttatacttatgccatgtggatctcttttgttctt 195  Q
    ||||||| ||| ||||||||| | |||||||||| | ||||| | || | |||  |||||||||||| ||||||||| ||||||| ||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  196 gattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgca 295  Q
    |||||||||||||||||||  ||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| || |    
T  3227 gattctttactagccattctttactatttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattgaa 3326  T
Q  296 ttataatccattttattaataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  3327 ttataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttactataaagctcctca 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 147 - 394
Target Start/End: Complemental strand, 22912739 - 22912492
Alignment:
Q  147 tttctaactaatctcttatacttatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatca-ttt 245  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||  ||    
T  22912739 tttctaactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattatttatctttcatttcccatcaggtt 22912640  T
Q  246 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcat 345  Q
    ||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  22912639 gcagaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaat-atgaggagttacattttaaaattattcat 22912541  T
Q  346 attcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||||||||||||| ||||||||||| | |||||||| || |||||||    
T  22912540 attcttaatcaatcctcttacacacacgaatttactattaagctcctca 22912492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 13786234 - 13786392
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13786234 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 13786333  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  13786334 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaattta 13786392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 25807909 - 25807751
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25807909 atctatctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 25807810  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25807809 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 25807751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 151 - 394
Target Start/End: Complemental strand, 23726231 - 23725991
Alignment:
Q  151 taactaatctcttatacttatgccatgtggatctcttttgttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaa 250  Q
    |||||||||||| |||||||||  || ||| ||||||||||||||||||||||||| | |||||  ||| |||||||||||||||  ||||  |||||||    
T  23726231 taactaatctctcatacttatgttatatggctctcttttgttcttgattctttactggtcattctttactatctatctttcatttttcatctgttgcaaa 23726132  T
Q  251 aacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatgaggggttacattttaaaattattcatattct 350  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| | |  ||||||||||| ||||||||||||||||    
T  23726131 aacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataatccattttattaatattaaacggttacatttt-aaattattcatattct 23726033  T
Q  351 taatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    |||||||||| |||   ||||||||||||||||||| |||||||    
T  23726032 taatcaatcctctt--gcacacaagtttactataaagctcctca 23725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 13786051 - 13786110
Alignment:
Q  79 ttatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  13786051 ttatctatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13786110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 25808083 - 25808033
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  25808083 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25808033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 39621645 - 39621696
Alignment:
Q  88 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 29679040 - 29679101
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgc 141  Q
    ||||| ||| |||||||||||||||||| ||||| ||||| |||||||||||| ||| ||||    
T  29679040 tatctctctctatatacatgtattctaaactacactttgcttatgtgtcacctcacctatgc 29679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 4528615 - 4528663
Alignment:
Q  19 aattcaatgttaaaaatggaatgattttttaagagttgtttcgttgaag 67  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||||||    
T  4528615 aattcaatgttaaaaatggagcgattttttaagagttgttgtgttgaag 4528663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 632405 - 632368
Alignment:
Q  19 aattcaatgttaaaaatggaatgattttttaagagttg 56  Q
    ||||||||||||||||| || |||||||||||||||||    
T  632405 aattcaatgttaaaaatagagtgattttttaagagttg 632368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22909545 - 22909497
Alignment:
Q  87 ctatatatacatgtattctaacctacattttgcatatgtgtcaccttac 135  Q
    ||||||||||||||||||||| ||||| ||||| ||  |||||||||||    
T  22909545 ctatatatacatgtattctaaactacactttgcttacatgtcaccttac 22909497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 13433590 - 13433432
Alignment:
Q  221 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatga 320  Q
    ||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13433590 atctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 13433491  T
Q  321 ggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagttta 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  13433490 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaattta 13433432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 16712155 - 16712075
Alignment:
Q  312 taataatgaggggttacattttaaaattattcatattcttaatcaatccacttacacacacaagtttactataaaactcctca 394  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||| || |||||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gttcaccataaaactcctca 16712075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 18877353 - 18877431
Alignment:
Q  80 tatctatctat--atatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgccttcatttctaacta 156  Q
    |||||||||||  ||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||    
T  18877353 tatctatctatctatatacatgtattctaacctacattttgcttaggtgtcaccttaccaatgcctccctttctaacta 18877431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 13433772 - 13433714
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 138  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  13433772 tatctatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13433714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 16857231 - 16857290
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  16857231 tttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 16857290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 26615381 - 26615320
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaa--gttacacaatgaatgcattataat 302  Q
    |||||||||||||| |||||||||||||||||||||  |||  |||||||||||||||||||    
T  26615381 tttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26615320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 26721309 - 26721248
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaa--gttacacaatgaatgcattataat 302  Q
    |||||||||||||| |||||||||||||||||||||  |||  |||||||||||||||||||    
T  26721309 tttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 8643636 - 8643578
Alignment:
Q  84 tatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcc 142  Q
    |||||||||||||||||||||||| ||||||||||| ||  |||||||| || ||||||    
T  8643636 tatctatatatacatgtattctaagctacattttgcttacatgtcacctcacaaatgcc 8643578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 5549 - 5493
Alignment:
Q  84 tatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatg 140  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  5549 tatctatatatacatgtattctaacctacatttttcctatgtgtcaccttaccaatg 5493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 1428 - 1376
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcacct 132  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  1428 tatctatctatatatacatgtattctaacctacattttgcctatgtgtaacct 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 10230 - 10171
Alignment:
Q  243 tttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 302  Q
    ||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  10230 tttgcaaaagcactgcatttacttcacttcatgcaagttgtgcaatgaatgcattataat 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 46443 - 46384
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    ||||||||||| ||| |||||||||||| ||||| ||| | |||||||||||| ||||||    
T  46443 tatctatctatctatgcatgtattctaagctacactttacttatgtgtcacctcaccaat 46384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 152344 - 152403
Alignment:
Q  80 tatctatctatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaat 139  Q
    ||||||||||| ||| |||||||||||| ||||| ||| | |||||||||||| ||||||    
T  152344 tatctatctatctatgcatgtattctaagctacactttacttatgtgtcacctcaccaat 152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University