View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11460_low_11 (Length: 392)
Name: NF11460_low_11
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11460_low_11 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 63597 - 63223
Alignment:
| Q |
19 |
attcaacttgtttgcataatcagaggtgagagggcttaaattcgattaaaaagatgtttattacacaggtccttttttgttatgttttgaaatttgaagg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63597 |
attcaacttgtttgcataatcagaggtgagagggcttaaattcgattaaaaagatgtttattacacaggtccttttttgttatgttttgaaatttgaagg |
63498 |
T |
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| Q |
119 |
ttagtctattagtctggtcacaatggtctgatctgctatgttatttctgaaattgaatatactcattagtgtaagataactcttgaatg-nnnnnnngtc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
63497 |
ttagtctattagtctggtcacaatggtctgatctgctgtgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgttttttttgtt |
63398 |
T |
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| Q |
218 |
catatataaaccagtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctctt |
317 |
Q |
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| T |
63397 |
catatataaaccagtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctctt |
63298 |
T |
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| Q |
318 |
gaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggttt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63297 |
gaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggttt |
63223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 21320202 - 21320576
Alignment:
| Q |
19 |
attcaacttgtttgcataatcagaggtgagagggcttaaattcgattaaaaagatgtttattacacaggtccttttttgttatgttttgaaatttgaagg |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320202 |
attcaacttgcttgcataatcagaggtgagagggcttaaattcgattaaaaagatgtttattacacaggtccttttttgttatgttttgaaatttgaagg |
21320301 |
T |
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| Q |
119 |
ttagtctattagtctggtcacaatggtctgatctgctatgttatttctgaaattgaatatactcattagtgtaagataactcttgaatg-nnnnnnngtc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21320302 |
ttagtctattagtctggtcacaatggtctgatctgctgtgttatttctgaaattgaatatactcattagtgtaagataactcttgaatgttttttttgtt |
21320401 |
T |
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| Q |
218 |
catatataaaccagtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctctt |
317 |
Q |
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| T |
21320402 |
catatataaaccagtgctactttagaagttgattgtatggtactactgtttatcttttattttgtttgtaacaatttgatttttggggcatcatgctctt |
21320501 |
T |
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| Q |
318 |
gaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggttt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320502 |
gaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggttt |
21320576 |
T |
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