View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_low_13 (Length: 372)

Name: NF11460_low_13
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_low_13
NF11460_low_13
[»] scaffold0053 (1 HSPs)
scaffold0053 (16-365)||(79414-79765)
[»] chr7 (20 HSPs)
chr7 (16-365)||(16090855-16091206)
chr7 (16-365)||(29181033-29181384)
chr7 (20-365)||(20906386-20906730)
chr7 (190-365)||(2971209-2971384)
chr7 (20-196)||(2966749-2966926)
chr7 (38-350)||(2465165-2465474)
chr7 (231-365)||(14319554-14319688)
chr7 (31-350)||(3857308-3857624)
chr7 (231-365)||(14230777-14230911)
chr7 (277-360)||(14567246-14567329)
chr7 (237-304)||(31155396-31155463)
chr7 (235-289)||(11382871-11382925)
chr7 (235-289)||(11389348-11389402)
chr7 (235-297)||(21230952-21231014)
chr7 (235-290)||(14422985-14423040)
chr7 (216-289)||(13679474-13679548)
chr7 (235-289)||(16009577-16009631)
chr7 (238-290)||(12590643-12590695)
chr7 (238-290)||(13007435-13007487)
chr7 (235-291)||(20311050-20311106)
[»] chr3 (19 HSPs)
chr3 (20-365)||(14865630-14865976)
chr3 (20-360)||(12033375-12033715)
chr3 (20-365)||(17131516-17131862)
chr3 (29-359)||(19235002-19235330)
chr3 (235-360)||(23370435-23370560)
chr3 (151-365)||(51301506-51301720)
chr3 (159-347)||(13323732-13323920)
chr3 (229-347)||(13302185-13302301)
chr3 (229-347)||(13312841-13312957)
chr3 (231-304)||(10389429-10389502)
chr3 (231-304)||(10414518-10414591)
chr3 (231-304)||(10421188-10421261)
chr3 (238-331)||(24933787-24933880)
chr3 (277-365)||(10555353-10555439)
chr3 (235-289)||(9534328-9534382)
chr3 (235-289)||(18929246-18929300)
chr3 (235-287)||(20247791-20247843)
chr3 (235-287)||(24192957-24193009)
chr3 (238-290)||(41455097-41455149)
[»] scaffold0072 (1 HSPs)
scaffold0072 (16-365)||(49894-50246)
[»] chr4 (6 HSPs)
chr4 (16-328)||(16146791-16147105)
chr4 (232-297)||(27906263-27906328)
chr4 (179-287)||(14486604-14486713)
chr4 (238-365)||(53483708-53483836)
chr4 (235-291)||(15408140-15408196)
chr4 (113-181)||(27906142-27906210)
[»] chr1 (8 HSPs)
chr1 (20-365)||(21710603-21710948)
chr1 (33-365)||(20851057-20851390)
chr1 (33-365)||(20857684-20858017)
chr1 (33-365)||(21706073-21706406)
chr1 (237-331)||(20044910-20045004)
chr1 (151-289)||(32651488-32651627)
chr1 (235-289)||(20437024-20437078)
chr1 (238-290)||(41112038-41112090)
[»] chr8 (9 HSPs)
chr8 (33-365)||(24320595-24320928)
chr8 (58-289)||(29643386-29643619)
chr8 (235-365)||(44477623-44477754)
chr8 (235-365)||(44492781-44492912)
chr8 (204-289)||(18614240-18614327)
chr8 (235-297)||(14056556-14056618)
chr8 (235-289)||(23482053-23482107)
chr8 (235-287)||(8727735-8727787)
chr8 (235-291)||(25111977-25112033)
[»] scaffold0023 (1 HSPs)
scaffold0023 (20-365)||(135224-135568)
[»] chr5 (22 HSPs)
chr5 (33-365)||(19236698-19237030)
chr5 (33-365)||(22460953-22461286)
chr5 (51-365)||(22467595-22467910)
chr5 (29-359)||(20772764-20773090)
chr5 (29-359)||(20781539-20781865)
chr5 (29-359)||(24929862-24930190)
chr5 (20-365)||(28909215-28909558)
chr5 (20-365)||(28945610-28945953)
chr5 (20-365)||(28895967-28896310)
chr5 (20-365)||(28924793-28925136)
chr5 (20-365)||(28889263-28889606)
chr5 (122-298)||(20820105-20820279)
chr5 (122-298)||(20827205-20827379)
chr5 (235-355)||(38144472-38144591)
chr5 (231-297)||(34830081-34830146)
chr5 (151-289)||(18407944-18408084)
chr5 (20-210)||(28931061-28931250)
chr5 (235-291)||(22438746-22438802)
chr5 (235-289)||(19512387-19512441)
chr5 (235-289)||(23111200-23111254)
chr5 (235-289)||(28370055-28370109)
chr5 (238-290)||(23528634-23528686)
[»] chr2 (16 HSPs)
chr2 (51-339)||(25180880-25181169)
chr2 (16-337)||(10357-10679)
chr2 (231-365)||(27207644-27207778)
chr2 (231-365)||(26885179-26885312)
chr2 (237-365)||(23168224-23168351)
chr2 (237-365)||(23579481-23579608)
chr2 (272-365)||(27366472-27366566)
chr2 (238-365)||(5705947-5706075)
chr2 (235-289)||(6483718-6483772)
chr2 (235-289)||(6487185-6487239)
chr2 (235-289)||(21908360-21908414)
chr2 (235-289)||(23265143-23265197)
chr2 (235-289)||(23280211-23280265)
chr2 (113-181)||(23168412-23168480)
chr2 (113-181)||(23579669-23579737)
chr2 (238-290)||(26583830-26583882)
[»] chr6 (23 HSPs)
chr6 (29-359)||(9099005-9099333)
chr6 (33-365)||(20007872-20008205)
chr6 (31-350)||(21364423-21364738)
chr6 (31-350)||(23968405-23968720)
chr6 (231-360)||(31252419-31252549)
chr6 (237-365)||(11288596-11288721)
chr6 (29-159)||(29097658-29097789)
chr6 (237-304)||(15458492-15458559)
chr6 (237-304)||(15465087-15465154)
chr6 (262-365)||(28288437-28288537)
chr6 (235-365)||(34639910-34640041)
chr6 (235-365)||(34646584-34646715)
chr6 (272-365)||(24563475-24563569)
chr6 (235-297)||(10986173-10986235)
chr6 (328-365)||(24641607-24641644)
chr6 (235-290)||(29614146-29614201)
chr6 (235-289)||(4477858-4477912)
chr6 (235-289)||(23839199-23839253)
chr6 (235-297)||(24512836-24512898)
chr6 (238-290)||(12168366-12168418)
chr6 (238-290)||(19287275-19287327)
chr6 (238-290)||(19785869-19785921)
chr6 (238-290)||(19878459-19878511)
[»] scaffold1318 (1 HSPs)
scaffold1318 (141-365)||(1837-2062)
[»] scaffold0348 (1 HSPs)
scaffold0348 (20-295)||(9121-9396)
[»] scaffold0131 (1 HSPs)
scaffold0131 (20-365)||(784-1126)
[»] scaffold0384 (1 HSPs)
scaffold0384 (38-331)||(16023-16316)
[»] scaffold1469 (1 HSPs)
scaffold1469 (20-304)||(1142-1424)
[»] scaffold0029 (3 HSPs)
scaffold0029 (31-350)||(91144-91462)
scaffold0029 (31-350)||(96870-97188)
scaffold0029 (237-290)||(111885-111938)
[»] scaffold0127 (1 HSPs)
scaffold0127 (218-360)||(10222-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (231-365)||(492953-493086)
[»] scaffold0553 (2 HSPs)
scaffold0553 (235-360)||(10125-10250)
scaffold0553 (262-331)||(11042-11111)
[»] scaffold0544 (1 HSPs)
scaffold0544 (235-360)||(1455-1580)
[»] scaffold0720 (1 HSPs)
scaffold0720 (231-365)||(3327-3461)
[»] scaffold0609 (1 HSPs)
scaffold0609 (231-365)||(5781-5916)
[»] scaffold0183 (1 HSPs)
scaffold0183 (237-359)||(6-125)
[»] scaffold0099 (1 HSPs)
scaffold0099 (38-288)||(12753-13019)
[»] scaffold0249 (1 HSPs)
scaffold0249 (237-304)||(13880-13947)
[»] scaffold0026 (2 HSPs)
scaffold0026 (235-365)||(111686-111817)
scaffold0026 (235-290)||(11850-11905)
[»] scaffold0261 (2 HSPs)
scaffold0261 (231-297)||(23562-23628)
scaffold0261 (113-181)||(23680-23748)
[»] scaffold0453 (1 HSPs)
scaffold0453 (231-294)||(10546-10609)
[»] scaffold0034 (1 HSPs)
scaffold0034 (231-297)||(73281-73347)
[»] scaffold2054 (1 HSPs)
scaffold2054 (237-290)||(717-770)
[»] scaffold1461 (1 HSPs)
scaffold1461 (231-289)||(1485-1543)
[»] scaffold0129 (1 HSPs)
scaffold0129 (238-365)||(45198-45326)
[»] scaffold0107 (1 HSPs)
scaffold0107 (235-297)||(40524-40586)
[»] scaffold0235 (1 HSPs)
scaffold0235 (236-347)||(22536-22646)
[»] scaffold0019 (1 HSPs)
scaffold0019 (235-291)||(135474-135530)
[»] scaffold0924 (1 HSPs)
scaffold0924 (235-290)||(750-805)
[»] scaffold0247 (1 HSPs)
scaffold0247 (235-290)||(11342-11397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (235-290)||(30858-30913)
[»] scaffold0317 (1 HSPs)
scaffold0317 (216-289)||(1367-1441)
[»] scaffold0222 (1 HSPs)
scaffold0222 (235-289)||(16821-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (235-289)||(116897-116951)
[»] scaffold0310 (1 HSPs)
scaffold0310 (235-291)||(17644-17700)
[»] scaffold0025 (1 HSPs)
scaffold0025 (235-287)||(14398-14450)


Alignment Details
Target: scaffold0053 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 79765 - 79414
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79765 acatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 79666  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttacct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  79665 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttacct 79566  T
Q  215 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  79565 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 79466  T
Q  315 -aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  79465 aaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 79414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 16090855 - 16091206
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16090855 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 16090954  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttacct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16090955 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttacct 16091054  T
Q  215 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc 314  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16091055 taggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 16091154  T
Q  315 -aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16091155 aaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 16091206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 29181384 - 29181033
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29181384 acatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 29181285  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttacct 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  29181284 taagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttacct 29181185  T
Q  215 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29181184 taagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 29181085  T
Q  315 -aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29181084 aaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 29181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 20906730 - 20906386
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| |||||||||| | || ||||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  20906730 caattcagcccattcaagcattcttacaaaacttctcaa-ttcatccatcatattctattttcatttcaattacgatcaacatcaacaacatagattaag 20906632  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaag 218  Q
    |||||||||||| |||  || ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  20906631 aaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaattttaccttaag 20906533  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  20906532 aatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaggacaaatagctcagcaaat 20906433  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    | |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20906432 ccgttcctaagttcttctctcttggtcttctccccttgccttagctt 20906386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 190 - 365
Target Start/End: Original strand, 2971209 - 2971384
Alignment:
Q  190 aacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  290 gaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2971309 gaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 2971384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 2966749 - 2966926
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  2966749 caattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatggattaag 2966848  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaaccctt 196  Q
    ||||||||||||||||  || |||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||    
T  2966849 aaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccctt 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 350
Target Start/End: Original strand, 2465165 - 2465474
Alignment:
Q  38 cattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatt 136  Q
    |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| |||||||| |  || || ||||||||| |||||||     
T  2465165 cattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatcaacaatacagagtaggaaatcatattaatcat- 2465262  T
Q  137 caaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaa 236  Q
    |||||| |||||||||||||| | |||||||| |||||||  ||||   |||||||||| |||| || | ||||||| ||| ||||||| ||||| ||||    
T  2465263 caaatataacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaatttcccaatttttaccataaaaacagttaaattgcttaa 2465362  T
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 336  Q
    ||||||||||| | ||||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||  ||  ||||||| || || ||||| ||||||    
T  2465363 ttttcagaaatcatatattatcattattgaaggatgatcccacccttaccttagaattgcaaagataa--agtgcagcaaaccaatttctaagctcttct 2465460  T
Q  337 ctcttggtcttctc 350  Q
    ||||||||||||||    
T  2465461 ctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 14319688 - 14319554
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  14319688 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 14319589  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||| |||||||||||||||||| ||||    
T  14319588 tcttctctcttagtcttctctccttgccttagctt 14319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 3857624 - 3857308
Alignment:
Q  31 aatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatact 129  Q
    |||||| |||||||||||||||| ||||| |||||| || ||||||||  |||||  ||||||  ||||| |||||||| |  || || ||||||||| |    
T  3857624 aatcaaacattcattcagaactttcaaaacttcatctattatattctaccttcatc-caattataatcaacatcaacaatacagagtaggaaatcatatt 3857526  T
Q  130 aatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt---accttaagaacagttt 226  Q
    |||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||||| |||| |||||||||   ||| ||| |||||||     
T  3857525 aatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaattt-cccaatttttttaccataaaaacagtta 3857428  T
Q  227 aattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||| ||||||||||||||| | ||||||| | ||||| ||||| |||||||||||||||||||||||| |||| ||  ||  ||||||| || || ||    
T  3857427 aattgcttaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc-aagataa--agtgcagcaaaccaatttct 3857332  T
Q  327 aagttcttctctcttggtcttctc 350  Q
    ||| ||||||||||||||||||||    
T  3857331 aagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 14230777 - 14230911
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| | ||||     |||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| ||||||||||    
T  14230777 gattaattttcagaaattatacattaaattcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagt 14230876  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    ||| |||||||||||||||||||||||||| ||||    
T  14230877 tctcctctcttggtcttctctccttgccttagctt 14230911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 14567246 - 14567329
Alignment:
Q  277 cacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14567246 cacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 31155396 - 31155463
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 31155463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 11382925 - 11382871
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11382925 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 11389402 - 11389348
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11389402 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 21231014 - 21230952
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| |||||    
T  21231014 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 21230952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 14422985 - 14423040
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14422985 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 14423040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 13679474 - 13679548
Alignment:
Q  216 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  13679474 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 16009577 - 16009631
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  16009577 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 12590695 - 12590643
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12590695 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 13007435 - 13007487
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  13007435 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 20311106 - 20311050
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||||||| |  |||||| |||||| ||||| || |||||||||||||||    
T  20311106 aattttcagaaattatacgttatgattattgagagatagtctcacccttaccttaga 20311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 14865630 - 14865976
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14865630 caattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 14865729  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaag 218  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  14865730 aaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaatcatcattaaccattattttcccaattttaccttaag 14865829  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14865830 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaat 14865929  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14865930 cagttcctaagttcttctctcttggtcttctctccttgccttagctt 14865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 12033715 - 12033375
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  12033715 caattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaacaacatagattaag 12033616  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttaccttaag 218  Q
    |||||||||||| |||  || ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  12033615 aaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaattttaccttaag 12033516  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  12033515 aacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa-aagcacatcaaat 12033417  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  12033416 cagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 17131516 - 17131862
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    ||||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  17131516 caattcagctcatttaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacatagattaag 17131615  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaag 218  Q
    |||||||||||| |||  || |||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||    
T  17131616 aaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaag 17131715  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  17131716 aacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaat 17131815  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  17131816 cagttcctaagttcttctctcttggtcttctctccttgccttagctt 17131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 19235330 - 19235002
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa-ttacgatcaatatcaacaacatggattaagaaatcata 127  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| ||||||||||||||| || ||||| |||||||||    
T  19235330 ccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatcaacaatatagattaggaaatcata 19235231  T
Q  128 ctaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagttta 227  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||||||||| | ||||||||||||||||||||||||||| |    
T  19235230 ctaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttcccaattttaccttaagaacagttaa 19235132  T
Q  228 attgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||||||| |||||    
T  19235131 attgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaaatcaattcct 19235034  T
Q  327 aagttcttctctcttggtcttctctccttgcct 359  Q
    ||| |||||||||||||||||||| ||||||||    
T  19235033 aagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 23370560 - 23370435
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 334  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  23370560 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 23370461  T
Q  335 ctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||||||||||    
T  23370460 ctctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 151 - 365
Target Start/End: Original strand, 51301506 - 51301720
Alignment:
Q  151 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttac-cttaagaacagtttaattgattaattttcagaaatta 249  Q
    |||||||||||||| |||| |  ||||||||| | ||| |||||| |||  ||||||||||  || | ||||| || |||||||||||||||||||||||    
T  51301506 taaacctgattcttgcaccatccctttcaaattagcatcaaccctaatt--cccaattttattctcatgaacaattcaattgattaattttcagaaatta 51301603  T
Q  250 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttctctcttggtctt 347  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||||||||||||||    
T  51301604 catattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttctctcttggtctt 51301702  T
Q  348 ctctccttgcctttgctt 365  Q
    ||||||||||||| ||||    
T  51301703 ctctccttgccttagctt 51301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 347
Target Start/End: Complemental strand, 13323920 - 13323732
Alignment:
Q  159 attcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatatt 255  Q
    ||||||||||| || ||||| || ||||||| |||||| | || |||||||||| ||| ||||||| | ||||| |||||||||||||||||||||||||    
T  13323920 attcttacaccattcctttcgaagtcatcatcaaccctaaatt-cccaattttatcttcaagaacaatctaatttgattaattttcagaaattacatatt 13323822  T
Q  256 atgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtctt 347  Q
    |||| ||||||||||||||| |||||||||||||||||||   ||| ||  |   ||||||||||||||||| ||||||||| |||| ||||    
T  13323821 atgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaaatcagcaaatcagttcctaggttcttctcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 13302301 - 13302185
Alignment:
Q  229 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaa 328  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||  | |||||||||||||||||||     
T  13302301 ttgattaattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13302204  T
Q  329 gttcttctctcttggtctt 347  Q
    |||| |||| |||| ||||    
T  13302203 gttcatctcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 13312957 - 13312841
Alignment:
Q  229 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaa 328  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||  | |||||||||||||||||||     
T  13312957 ttgattaattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13312860  T
Q  329 gttcttctctcttggtctt 347  Q
    |||| |||| |||| ||||    
T  13312859 gttcatctcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 10389502 - 10389429
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10389429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 10414591 - 10414518
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10414518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 10421261 - 10421188
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10421188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 24933880 - 24933787
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||||||| |   | ||||| ||| ||||||||| |||||||||    
T  24933880 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtaggaagaattaacaccgcaaatcagctcctaagtt 24933787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 10555353 - 10555439
Alignment:
Q  277 cacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||| ||| ||||  || ||  ||||||| | |||||| |||||||||||||||||||| ||||||||| ||||    
T  10555353 cacccttaccttagaattgtaaacacaaa-agtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgccttagctt 10555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 9534328 - 9534382
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  9534328 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 18929246 - 18929300
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18929246 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 20247843 - 20247791
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 287  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  20247843 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 24192957 - 24193009
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 287  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  24192957 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 41455149 - 41455097
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41455149 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41455097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 50246 - 49894
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50246 acatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 50147  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaa-ttttacc 213  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  50146 taagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaatttttacc 50047  T
Q  214 ttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacag 313  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  50046 ttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacaa 49947  T
Q  314 c-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    | |||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  49946 caaaatcagttcctaagttcttctctcttggttttctctctttgccttagctt 49894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 16147105 - 16146791
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16147105 acatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 16147006  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttacct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  16147005 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttacct 16146906  T
Q  215 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16146905 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagc 16146806  T
Q  315 -aaatcagttcctaa 328  Q
     ||||||||||||||    
T  16146805 aaaatcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 27906263 - 27906328
Alignment:
Q  232 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    |||||||||||||||||| | |||||||  ||||||||||||||||||||||| ||||||||||||    
T  27906263 attaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 14486604 - 14486713
Alignment:
Q  179 aaatcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcc 276  Q
    |||||||||| |||||| || |||||||||||| ||| ||||||| || |||| ||||||||||||||||||| |||||||||  |||||| |||| ||     
T  14486604 aaatcatcatcaaccct-atattcccaattttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtct 14486702  T
Q  277 cacccttacct 287  Q
    |||||||||||    
T  14486703 cacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 365
Target Start/End: Original strand, 53483708 - 53483836
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 335  Q
    |||||| ||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||    
T  53483708 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 53483806  T
Q  336 tctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||| ||||| ||||    
T  53483807 tctcttggtcttctctcctagccttagctt 53483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 15408140 - 15408196
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  15408140 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 15408196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 27906142 - 27906210
Alignment:
Q  113 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 181  Q
    ||||||||||||||||  | |||  || |||||||   ||||| |||||||||||||||||||||||||    
T  27906142 gattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaa 27906210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 21710603 - 21710948
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||    
T  21710603 caattcagcccattcaagcattcatacaaagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaacaacatagattaag 21710702  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaag 218  Q
     ||||||||||| ||| ||| || ||||||||||||||||| |||| || |||||||||||| ||||| | |||||| | ||||||||||||||||||||    
T  21710703 gaatcatactaaacat-caagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaattttaccttaag 21710801  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  21710802 aacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaat 21710901  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21710902 cagttcctaagttcttctctcttggtcttctctccttgccttagctt 21710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 33 - 365
Target Start/End: Complemental strand, 20851390 - 20851057
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||     
T  20851390 tcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaatcatactaaa 20851291  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattg 231  Q
    |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  20851290 catcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattg 20851191  T
Q  232 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  20851190 attaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagtt 20851091  T
Q  332 cttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||| ||||    
T  20851090 cttctctcttggtcttctctccttgccttagctt 20851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 365
Target Start/End: Complemental strand, 20858017 - 20857684
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||| ||||||||     
T  20858017 tcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaaacatactaaa 20857918  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattg 231  Q
    |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  20857917 catcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattg 20857818  T
Q  232 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  20857817 attaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagtt 20857718  T
Q  332 cttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||| ||||    
T  20857717 cttctctcttggtcttctctccttgccttagctt 20857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 365
Target Start/End: Original strand, 21706073 - 21706406
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||| ||||||||     
T  21706073 tcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaaacatactaaa 21706172  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattg 231  Q
    |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  21706173 catcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattg 21706272  T
Q  232 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  21706273 attaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagtt 21706372  T
Q  332 cttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||| ||||    
T  21706373 cttctctcttggtcttctctccttgccttagctt 21706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 20045004 - 20044910
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    ||||||||| ||| |||||| ||  |||||| ||||||||||||||||||||||||||| |   | ||||| ||||||||||||| |||||||||    
T  20045004 ttttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 20044910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 32651488 - 32651627
Alignment:
Q  151 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaat 247  Q
    ||||| ||||||||||||| |  ||||||||||| ||| |||||| |||  |||||||||   ||  |||||||  | |||| ||| |||||||||||||    
T  32651488 taaacatgattcttacaccatccctttcaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaactcaattagatcaattttcagaaat 32651585  T
Q  248 tacatattatgactattgaaagataatcccacccttacctta 289  Q
    || ||| ||||| |||||| ||||| || |||||||||||||    
T  32651586 tatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 20437078 - 20437024
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  20437078 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 41112038 - 41112090
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41112038 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 365
Target Start/End: Complemental strand, 24320928 - 24320595
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||     
T  24320928 tcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagattaagaaatcatactaaa 24320829  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattg 231  Q
    |||  || ||||||| |||||||||||| | || ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  24320828 catcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattg 24320729  T
Q  232 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  24320728 attaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagtt 24320629  T
Q  332 cttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||| ||||    
T  24320628 cttctctcttggtcttctctccttgccttagctt 24320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 289
Target Start/End: Complemental strand, 29643619 - 29643386
Alignment:
Q  58 aattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacct 157  Q
    |||||||||| ||||||||||||||||| |||||  |||||  |||||||  || ||||||||||||||||| | ||   || |||||||  || ||||     
T  29643619 aattcatccaacatattctattttcattccaattctgatcacaatcaacattatagattaagaaatcatactgaacaccaaattacaacacaattaaccc 29643520  T
Q  158 gattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttaccttaa-gaacagtttaatt-gattaattttcagaaattacatat 254  Q
     |||||||||||  | ||| | |||||||||| |||||||| || | |||||||| ||| | ||||| || |||| ||||||||||||||||||||||||    
T  29643519 aattcttacaccaatccttcctaaatcatcatcaacccttaatt-ctcaattttatcttcatgaacaattcaatttgattaattttcagaaattacatat 29643421  T
Q  255 tatgactattgaaagataatcccacccttacctta 289  Q
    ||||| ||||||||||||||| |||||||||||||    
T  29643420 tatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 44477623 - 44477754
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 332  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||    | |||||| ||||  |||   |||||    
T  44477623 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44477721  T
Q  333 ttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  44477722 ttctctcttggtcttctctccttgccttagctt 44477754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 44492781 - 44492912
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 332  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||    | |||||| ||||  |||   |||||    
T  44492781 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44492879  T
Q  333 ttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  44492880 ttctctcttggtcttctctccttgccttagctt 44492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 18614240 - 18614327
Alignment:
Q  204 caattttacctt-aagaacagtttaattg-attaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    |||||||| ||| ||||||| || ||||| || ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18614240 caattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 14056618 - 14056556
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || ||||||||||||||| |||||    
T  14056618 aattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgca 14056556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 23482107 - 23482053
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23482107 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 8727787 - 8727735
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 287  Q
    ||||||||||||||| | ||||||| ||||||  ||||||| |||||||||||    
T  8727787 aattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 25111977 - 25112033
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || |||||||||||||||    
T  25111977 aattttcagaatttacatactattattattgagagatagtctcacccttaccttaga 25112033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 135224 - 135568
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||||||||| |||||  |||||  ||||||||||| |||||||    
T  135224 caattcagcccattcaagcattcatacaaaacttcccaa-ttcatccatcatattctattttcattccaattttgatcacgatcaacaacatagattaag 135322  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aa 217  Q
    |||||||||||| |||  || |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||| ||    
T  135323 aaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-ctcaattttacctttaa 135420  T
Q  218 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaa 317  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  135421 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgcaaagacaaatagcacagcaaa 135520  T
Q  318 tcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  135521 tcagttcctaagctcttctctcttggtcttctctccttgccttagctt 135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 33 - 365
Target Start/End: Original strand, 19236698 - 19237030
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| ||||||| |||||||||||| ||||||||||||  ||||||||||| |||||||||  ||||||||     
T  19236698 tcaagcattcatgcaaggcttccaaaattcattcatcatactctattttcattccaattacgatcagcatcaacaacatagattaagaacacatactaaa 19236797  T
Q  133 cattcaaa-tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaatt 230  Q
    |  ||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| ||||    
T  19236798 c--tcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaatt 19236895  T
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  19236896 gattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagt 19236995  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||| ||||    
T  19236996 tcttctctcttggtcttctctccttgccttagctt 19237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 33 - 365
Target Start/End: Original strand, 22460953 - 22461286
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| || ||||||| ||||||||     
T  22460953 tcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagaataagaaaacatactaaa 22461052  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaattga 232  Q
    |||  || ||| ||| |||||||||||| |||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||    
T  22461053 catcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattga 22461152  T
Q  233 ttaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||    
T  22461153 ttaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaatcagttcttaagtt 22461252  T
Q  332 cttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||| ||||    
T  22461253 cttctctcttggtcttctctccttgccttagctt 22461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 51 - 365
Target Start/End: Original strand, 22467595 - 22467910
Alignment:
Q  51 cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacatta 150  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||||||| || ||||||| |||||||| |||  || ||| ||| ||    
T  22467595 cttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaacatagaataagaaaacatactaaacatcaaagtacgacaata 22467694  T
Q  151 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaatta 249  Q
    |||||||||| |||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  22467695 taaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcagaaatta 22467794  T
Q  250 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttct 349  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||    
T  22467795 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttct 22467894  T
Q  350 ctccttgcctttgctt 365  Q
    ||||||||||| ||||    
T  22467895 ctccttgccttagctt 22467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 20772764 - 20773090
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcata 127  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||  |||||| |||||| |||||||| || || || |||||||||    
T  20772764 ccaatcaaacattcattcagaacttccaaaacttcatccattatattctactttcatc-caattatgatcaacatcaacaatatagagtaggaaatcata 20772862  T
Q  128 ctaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagttta 227  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||||||||||||||||||||||||| |    
T  20772863 ctaatcat-caaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaatttcccaattttaccttaagaacagttaa 20772961  T
Q  228 attgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttccta 327  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||| ||||||    
T  20772962 attgattaattttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaagataa--agtacagcaaatcaattccta 20773059  T
Q  328 agttcttctctcttggtcttctctccttgcct 359  Q
    || |||||||||||||||||||| ||||||||    
T  20773060 agctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 20781539 - 20781865
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcata 127  Q
    |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||  |||||| |||||| |||||||| || || || |||||||||    
T  20781539 ccaatcaaacattcattcagaacttccaaaacttcatccattatattctactttcatc-caattatgatcaacatcaacaatatagagtaggaaatcata 20781637  T
Q  128 ctaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagttta 227  Q
     ||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||||||||||||||||||||||||| |    
T  20781638 ataatcat-caaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaatttcccaattttaccttaagaacagttaa 20781736  T
Q  228 attgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttccta 327  Q
    |||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||| ||||||    
T  20781737 attgattaattttcagaaatcatatattataattattgaaagataatcccacccttaccttagaattgcaaagataa--agtacagcaaatcaattccta 20781834  T
Q  328 agttcttctctcttggtcttctctccttgcct 359  Q
    || |||||||||||||||||||| ||||||||    
T  20781835 agctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 24930190 - 24929862
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa-ttacgatcaatatcaacaacatggattaagaaatcata 127  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| | ||| ||| ||||||||||||||  || ||||| |||||||||    
T  24930190 ccaatcaaacattcattcagaacttccaacattcatctatcatattctattttcactccaaattatgatcaatatcaacattatagattaggaaatcata 24930091  T
Q  128 ctaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagttta 227  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| |||   |||||||||||||||| | ||||||||||||||||||||||||||| |    
T  24930090 ctaatcat-caaatacaacattataaacctgattcttacacatttccttcagaatcatcattaaccctaaatttcccaattttaccttaagaacagttaa 24929992  T
Q  228 attgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||||||| |||| |||||| | ||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||  ||  |||||| ||| |||||    
T  24929991 attgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgtaaagataa--agtgcagcaagtcaattcct 24929894  T
Q  327 aagttcttctctcttggtcttctctccttgcct 359  Q
    ||| |||||||||||||||||||| ||||||||    
T  24929893 aagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28909558 - 28909215
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28909558 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28909460  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt-accttaag 218  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  |||||||||| || ||| |||||||||||||| ||||||||    
T  28909459 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaag 28909361  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||  ||||||||||||    
T  28909360 aacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaa-aagcacagcaaat 28909262  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||    
T  28909261 caattcctaggttcttctctcttggtcttctctccttgccttagctt 28909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28945953 - 28945610
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28945953 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28945855  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt-accttaag 218  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  |||||||||| || ||| |||||||||||||| ||||||||    
T  28945854 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaag 28945756  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||  ||||||||||||    
T  28945755 aacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaa-aagcacagcaaat 28945657  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||    
T  28945656 caattcctaggttcttctctcttggtcttctctccttgccttagctt 28945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28896310 - 28895967
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28896310 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28896212  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt-accttaag 218  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  |||||||||| || ||| |||||||||||||| ||||||||    
T  28896211 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaag 28896113  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||  ||||||||||||    
T  28896112 aacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaa-aagcacagcaaat 28896014  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||    
T  28896013 caattcctaggttcttctctcttggtcttctctccttgccttagctt 28895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28925136 - 28924793
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28925136 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28925038  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt-accttaag 218  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  |||||||||| || ||| |||||||||||||| ||||||||    
T  28925037 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaag 28924939  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||  ||||||||||||    
T  28924938 aacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaa-aagcacagcaaat 28924840  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||    
T  28924839 caattcctaggttcttctctcttggtcttctctccttgccttagctt 28924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28889606 - 28889263
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28889606 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28889508  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt-accttaag 218  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  |||||||||| || ||| |||||||||||||| ||||||||    
T  28889507 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaag 28889409  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaat 318  Q
    |||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| | |||  ||||  ||||||    
T  28889408 aacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaa-aagcaatgcaaat 28889310  T
Q  319 cagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    || |||||| |||||||||||||||||||||||||||||||| ||||    
T  28889309 caattcctaggttcttctctcttggtcttctctccttgccttagctt 28889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 122 - 298
Target Start/End: Original strand, 20820105 - 20820279
Alignment:
Q  122 atcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaac 221  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  20820105 atcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaattttcc-aattttaccttaagaac 20820202  T
Q  222 agtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 298  Q
     ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  20820203 ggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 122 - 298
Target Start/End: Original strand, 20827205 - 20827379
Alignment:
Q  122 atcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaac 221  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  20827205 atcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaattttcc-aattttaccttaagaac 20827302  T
Q  222 agtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 298  Q
     ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  20827303 ggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 38144591 - 38144472
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagca-aatcagttcctaagttct 333  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||  ||||| | |  |||| ||||||| |||| |||||||||||||    
T  38144591 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga-atgatta-cacagcacaatcggttcctaagttct 38144494  T
Q  334 tctctcttggtcttctctcctt 355  Q
    ||||||||||||||||||||||    
T  38144493 tctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 34830081 - 34830146
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    |||| |||||||||||||| | ||||  | |||||||||||||||||||||||||||||||||||||    
T  34830081 gattgattttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 289
Target Start/End: Complemental strand, 18408084 - 18407944
Alignment:
Q  151 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaa 246  Q
    ||||| ||||||||||||| || |||||||| ||| ||| |||||| |||  |||||||||   ||  ||||||| || |||| ||| ||||||||||||    
T  18408084 taaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaa 18407987  T
Q  247 ttacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||| ||||||||| |||||| ||||| || |||||||||||||    
T  18407986 ttatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 28931250 - 28931061
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||||  |||||| |||||| | || | | |  ||||| |    
T  28931250 caatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatc-caattatgatcaacaacagcgatacagattagg 28931152  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctt-tcaaatcatcattaacccttattttcccaatttt 210  Q
    ||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||   ||| |||||| || ||| ||||||||||||||    
T  28931151 aaatcatactaatcatt-aaatacaacgtcataaacctgaattttacccattttcttcaaaaaccatcatcaaacctaattttcccaatttt 28931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 22438802 - 22438746
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||    
T  22438802 aattttcagaaattatacattatgattattgagagatagtctcacccttaccttaga 22438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 19512387 - 19512441
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  19512387 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 23111254 - 23111200
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23111254 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 28370109 - 28370055
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  28370109 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 23528634 - 23528686
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  23528634 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 23528686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 51 - 339
Target Start/End: Complemental strand, 25181169 - 25180880
Alignment:
Q  51 cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacatta 150  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||  || ||||| | ||    
T  25181169 cttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaata 25181070  T
Q  151 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaatta 249  Q
    ||||||||||   || ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25181069 taaacctgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaatta 25180970  T
Q  250 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctc 339  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  25180969 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 10357 - 10679
Alignment:
Q  16 acatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggat 115  Q
    |||||||||| |  || |||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| |||    
T  10357 acatcaattcggttcattcaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacgatcagcatcaacaacatagat 10456  T
Q  116 taagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacct 214  Q
    |||||||||||||||| |||  || ||||||| ||||||||| || | || ||||||||||||||| ||||| |||||||| | ||||||||||||||||    
T  10457 taagaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttacct 10556  T
Q  215 taagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc 314  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||    
T  10557 taagaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaaagacaaaaagcacagc 10656  T
Q  315 aaatcagttcctaagttcttctc 337  Q
    |||||||||||||||| ||||||    
T  10657 aaatcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 27207778 - 27207644
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  27207778 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 27207679  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||| ||||    
T  27207678 tcttctctcttggtcttctctccttgccttagctt 27207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 231 - 365
Target Start/End: Original strand, 26885179 - 26885312
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| ||||||||||    
T  26885179 gattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagt 26885277  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26885278 tcttctctcttggttttctctccttgccttagctt 26885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 23168351 - 23168224
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 336  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||  ||||||||||| | || |||||||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23168253  T
Q  337 ctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||| ||||    
T  23168252 ctcttggtcttctctccttgccttagctt 23168224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 23579608 - 23579481
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 336  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||  ||||||||||| | || |||||||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23579510  T
Q  337 ctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||| ||||    
T  23579509 ctcttggtcttctctccttgccttagctt 23579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 365
Target Start/End: Complemental strand, 27366566 - 27366472
Alignment:
Q  272 aatcccacccttaccttagaattgcaaagacaattag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||| ||||||||||||||||||||||||||||  |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  27366566 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 27366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 5706075 - 5705947
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 335  Q
    |||||| ||||| | ||||||| || ||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||    
T  5706075 tttcaggaattatagattatgattaatgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 5705977  T
Q  336 tctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||| ||||| ||||    
T  5705976 tctcttggtcttctctcctagccttagctt 5705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 6483718 - 6483772
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6483718 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 6487185 - 6487239
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6487185 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 21908360 - 21908414
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  21908360 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 23265143 - 23265197
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23265143 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 23280211 - 23280265
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23280211 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 23168480 - 23168412
Alignment:
Q  113 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 181  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23168480 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23168412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 23579737 - 23579669
Alignment:
Q  113 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 181  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23579737 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 26583830 - 26583882
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  26583830 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 26583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 9099333 - 9099005
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa-ttacgatcaatatcaacaacatggattaagaaatcata 127  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| ||||||||||||||| || ||||| |||||||||    
T  9099333 ccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatcaacaatatagattaggaaatcata 9099234  T
Q  128 ctaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagttta 227  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||||||||| | ||||||||||||||||||||||||||| |    
T  9099233 ctaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttcccaattttaccttaagaacagttaa 9099135  T
Q  228 attgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||||||| |||||    
T  9099134 attgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaaatcaattcct 9099037  T
Q  327 aagttcttctctcttggtcttctctccttgcct 359  Q
    ||| |||||||||||||||||||| ||||||||    
T  9099036 aagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 365
Target Start/End: Complemental strand, 20008205 - 20007872
Alignment:
Q  33 tcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||| ||   |||| ||||||||| |||||||||||||||||||| ||||||||||||  |||||||| || |||||||||| ||||||||     
T  20008205 tcaagcattcatgcaaggcttctaaaattcattcatcatattctattttcattccaattacgatcagcatcaacaatatagattaagaaaacatactaaa 20008106  T
Q  133 cattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttaccttaagaacagtttaattg 231  Q
    |||  || ||||||| |||||||||||| |||| |||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  20008105 catcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattg 20008006  T
Q  232 attaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  20008005 attaatttttcataaattatatattatgactattgaaagatgatcccacccttaccttagaattgcaaagacaa-aagcacagcaaatgagttcctaagt 20007907  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||| ||||    
T  20007906 tcttctctcttggtcttctctccttgccttagctt 20007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 21364738 - 21364423
Alignment:
Q  31 aatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatact 129  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| |||||||| |  || || ||||||||| |    
T  21364738 aatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatcaacaatacagagtaggaaatcatatt 21364640  T
Q  130 aatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaat 229  Q
    |||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||||||||||| ||| ||||||| |||    
T  21364639 aatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-cccaattttaccataa-aacagttaaat 21364543  T
Q  230 tgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaag 329  Q
    || ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||  ||||||||||| || |||||| |    
T  21364542 tgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa-aagcacagcaaaacaattcctagg 21364444  T
Q  330 ttcttctctcttggtcttctc 350  Q
    |||||||||||||||||||||    
T  21364443 ttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 23968720 - 23968405
Alignment:
Q  31 aatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatact 129  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| |||||||| |  || || ||||||||| |    
T  23968720 aatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatcaacaatacagagtaggaaatcatatt 23968622  T
Q  130 aatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaat 229  Q
    |||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||||||||||| ||| ||||||| |||    
T  23968621 aatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-cccaattttaccataa-aacagttaaat 23968525  T
Q  230 tgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaag 329  Q
    || ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||  ||||||||||| || |||||| |    
T  23968524 tgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa-aagcacagcaaaacaattcctagg 23968426  T
Q  330 ttcttctctcttggtcttctc 350  Q
    |||||||||||||||||||||    
T  23968425 ttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 360
Target Start/End: Original strand, 31252419 - 31252549
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaa 328  Q
    ||||||||||||||||||| ||||||| |  ||| |||||||||| ||||||||||||||||||||||||||||    | |||||| |||| ||||||||    
T  31252419 gattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcctaa 31252517  T
Q  329 gttcttctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||||||||||||||||    
T  31252518 gttcttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 11288721 - 11288596
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 336  Q
    ||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||| |||||||  | |||||| |||||||||||||| ||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaa-aaacacagc-aatcagttcctaagctcttct 11288624  T
Q  337 ctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||| ||||||||| ||||    
T  11288623 ctcttggtcttctc-ccttgccttagctt 11288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 29097658 - 29097789
Alignment:
Q  29 ccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaa-ttacgatcaatatcaacaacatggattaagaaatcat 126  Q
    |||||||| |||||||||||||||||||||| |||||| || |||||||||||||| ||||| ||| ||||||||||||||  || ||||| ||||||||    
T  29097658 ccaatcaaacattcattcagaacttccaaaaattcatctattatattctattttcacttcaaattatgatcaatatcaacattatagattaggaaatcat 29097757  T
Q  127 actaatcattcaaatacaacattataaacctga 159  Q
    |||||||| |||||||||||| |||||||||||    
T  29097758 actaatca-tcaaatacaacagtataaacctga 29097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 15458492 - 15458559
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 15458559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 15465087 - 15465154
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 15465154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 365
Target Start/End: Complemental strand, 28288537 - 28288437
Alignment:
Q  262 attgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttt 361  Q
    ||||| ||||| || ||||||||||||||||||||||||||||  | |||||| |||||||||||||| | |||||||||||||||||| |||||||||     
T  28288537 attgagagatagtctcacccttaccttagaattgcaaagacaa-aaacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgcctta 28288441  T
Q  362 gctt 365  Q
    ||||    
T  28288440 gctt 28288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 34640041 - 34639910
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 332  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  34640041 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34639943  T
Q  333 ttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  34639942 ttctctcttggtcttctctccttgccttagctt 34639910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 34646715 - 34646584
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 332  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  34646715 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34646617  T
Q  333 ttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  34646616 ttctctcttggtcttctctccttgccttagctt 34646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 24563475 - 24563569
Alignment:
Q  272 aatcccacccttaccttagaattgcaaagacaattag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||| ||||||||||||||||||||||||||||  |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  24563475 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 24563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 10986235 - 10986173
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    |||||| |||||||| | ||||||| |||||||||||| || |||||||||||||||||||||    
T  10986235 aatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 24641644 - 24641607
Alignment:
Q  328 agttcttctctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  24641644 agttcttctctcttggtcttctctccttgccttagctt 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 29614201 - 29614146
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29614201 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 29614146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 4477858 - 4477912
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  4477858 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 23839199 - 23839253
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  23839199 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 24512898 - 24512836
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||| |||||||| |||||    
T  24512898 aattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgca 24512836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 12168366 - 12168418
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12168366 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 19287275 - 19287327
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19287275 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19287327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 19785921 - 19785869
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19785921 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 19878459 - 19878511
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19878459 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19878511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 141 - 365
Target Start/End: Complemental strand, 2062 - 1837
Alignment:
Q  141 tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaattgattaatt 238  Q
    |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||    
T  2062 tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt 1964  T
Q  239 ttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctct 338  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  1963 ttcagaaattatatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctct 1864  T
Q  339 cttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||| ||||    
T  1863 cttggtcttctctccttgccttagctt 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 9121 - 9396
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||||||||||| ||||||| |||| || ||||||| || ||||||||||||||||||||||| || |||||  |||||  ||||||||||| |||| ||    
T  9121 caattcagcccattcaagcaatcatacaaaacttcccaa-ttcatccatcatattctattttcgttccaattctgatcacaatcaacaacatagattgag 9219  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aa 217  Q
    |||||||||||| |||  || |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || ||    
T  9220 aaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttacttttaa 9318  T
Q  218 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattg 295  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9319 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 784 - 1126
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaag 119  Q
    |||| ||||||||||||||||| || |||||  ||| |||||||| ||| | || ||||||||||  |||||| |||||| | |||||  || |||        
T  784 caatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttcatc-caattatgatcaacaacaacattatagatcgga 882  T
Q  120 aaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaaga 219  Q
    || || |||||||||| |||| ||||| |||||||||| | |||||||| |||||||  |||||  |||||||||| ||||||||||||||||| |||||    
T  883 aactcttactaatcat-caaacacaactttataaacctaaatcttacacattttcttcaaaatcgccattaaccctaattttcccaattttaccataaga 981  T
Q  220 acagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatc 319  Q
    |||||| ||||| ||||||||||||||| | ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||  |||||||||||||    
T  982 acagttaaattgcttaattttcagaaatcatatattatcactattgagagatgatcccacccttaccttagaattgcaaagacaa-aagcacagcaaatc 1080  T
Q  320 agttcctaagttcttctctcttggtcttctctccttgcctttgctt 365  Q
    | |||||| |||||||||||||||||||||||||||||||| ||||    
T  1081 aattcctaggttcttctctcttggtcttctctccttgccttagctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 38 - 331
Target Start/End: Complemental strand, 16316 - 16023
Alignment:
Q  38 cattcattcagaacttccaaaattcatccatcatattctatttt-catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatt 136  Q
    |||||||||||||||||||||| || || ||||||||||||||| || |||||||| ||||||||| ||||| || |||||  ||||||||||||||||     
T  16316 cattcattcagaacttccaaaactcttctatcatattctatttttcacttcaattatgatcaatatgaacaatatagattagaaaatcatactaatcat- 16218  T
Q  137 caaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaa 236  Q
    |||||||||||| || |||||||||||| ||| |||||||  ||||||||||||||||| | || || | ||||| ||||| ||||||| ||||||||||    
T  16217 caaatacaacatcatgaacctgattcttgcacattttcttcaaaatcatcattaaccctaaatt-ccaatttttatcttaaaaacagttaaattgattaa 16119  T
Q  237 tttt-cagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| |   | ||||| ||||||||||||| |||||||||    
T  16118 tttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 1142 - 1424
Alignment:
Q  20 caattcagcccaatcaagcattcattcagaa-cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaa 118  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||  ||| | || ||||||||||  |||||| |||||| | |||||| |  |||||     
T  1142 caattcagcccaatcaagcattcatacagaaacttccaaa-ttcacacataacatgctattttcatc-caattatgatcaacaacaacaatacagattag 1239  T
Q  119 gaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttaccttaag 218  Q
    ||||||||||||||||| ||| || |||||| ||||||||| |||||| | |||||||  ||||||||||||  ||| ||||||||||||||||||||||    
T  1240 gaaatcatactaatcat-caattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttcccaattttaccttaag 1338  T
Q  219 aacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||||| ||||| ||||||||||||||  | ||||||  |||||||||||  |||||||||||||||||||||||||||||||||    
T  1339 aacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaa 1424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 91462 - 91144
Alignment:
Q  31 aatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatact 129  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| |||| ||| |  || || ||||||||| |    
T  91462 aatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatcaccaatacagagtaggaaatcatatt 91364  T
Q  130 aatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt---accttaagaacagttt 226  Q
    |||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||||| |||| |||||||||   ||| ||| |||||||     
T  91363 aatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaattt-cccaatttttttaccataaaaacagtta 91266  T
Q  227 aattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||| ||||||||||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||  ||  ||||||| || || ||    
T  91265 aattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaagataa--agtgcagcaaaccaatttct 91168  T
Q  327 aagttcttctctcttggtcttctc 350  Q
    ||| ||||||||||||||||||||    
T  91167 aagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 97188 - 96870
Alignment:
Q  31 aatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatact 129  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| |||| ||| |  || || ||||||||| |    
T  97188 aatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatcaccaatacagagtaggaaatcatatt 97090  T
Q  130 aatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaatttt---accttaagaacagttt 226  Q
    |||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||||| |||| |||||||||   ||| ||| |||||||     
T  97089 aatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaattt-cccaatttttttaccataaaaacagtta 96992  T
Q  227 aattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcct 326  Q
    ||||| ||||||||||||||| | ||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||  ||  ||||||| || || ||    
T  96991 aattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgcaaagataa--agtgcagcaaaccaatttct 96894  T
Q  327 aagttcttctctcttggtcttctc 350  Q
    ||| ||||||||||||||||||||    
T  96893 aagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 111885 - 111938
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  111885 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 218 - 360
Target Start/End: Original strand, 10222 - 10364
Alignment:
Q  218 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaa 317  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||  |||||||||||    
T  10222 gaacaattcaattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaa 10321  T
Q  318 tcagttcctaagttcttctctcttggtcttctctccttgcctt 360  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  10322 tccgttcctaagttcttctctcttggtcttctctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 493086 - 492953
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| | |||| || ||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||    
T  493086 gattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagt 492988  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||| ||||    
T  492987 tcttctctcttggtcttctctccttgccttagctt 492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 10250 - 10125
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 334  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  10250 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 10151  T
Q  335 ctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||||||||||    
T  10150 ctctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 11111 - 11042
Alignment:
Q  262 attgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 331  Q
    |||||| ||||||||||||||||||||||||||  |   | ||||| ||||||||||||| |||||||||    
T  11111 attgaaggataatcccacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaagtt 11042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 1580 - 1455
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 334  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  1580 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 1481  T
Q  335 ctctcttggtcttctctccttgcctt 360  Q
    ||||||||||||||||||||||||||    
T  1480 ctctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 3461 - 3327
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 330  Q
    ||||||||||||||||||| ||||||     |||||||||||||  ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||    
T  3461 gattaattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagt 3362  T
Q  331 tcttctctcttggtcttctctccttgcctttgctt 365  Q
    ||| |||||||||||||||||| ||||||| ||||    
T  3361 tctcctctcttggtcttctctcgttgccttagctt 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 5916 - 5781
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaa 328  Q
    ||||||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    | |||||| |||| |||||  |    
T  5916 gattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcccta 5818  T
Q  329 gttcttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5817 gttcttctctcttggtcttctctccttgccttagctt 5781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 237 - 359
Target Start/End: Original strand, 6 - 125
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 336  Q
    ||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||| ||| |||||||| ||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaagtcaattcctaagctcttct 103  T
Q  337 ctcttggtcttctctccttgcct 359  Q
    |||||||||||||| ||||||||    
T  104 ctcttggtcttctc-ccttgcct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 288
Target Start/End: Original strand, 12753 - 13019
Alignment:
Q  38 cattcattcagaac-ttccaaa-attcatccatcatattctatttt-catttcaatt--acgatcaatatcaacaacatggattaagaaatcatactaat 132  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||| || | ||| |  | ||||||||||||||  || ||||| ||||||||||||||    
T  12753 cattcattcagaaccttccaaccattcatctatcatattctatttttcactccaaattaatgatcaatatcaacattatagattaggaaatcatactaat 12852  T
Q  133 cattcaaatacaacattataaacct-gattctt-acaccttttctttcaaatcat-cattaacccttattttccc--aattttacc-ttaagaacagttt 226  Q
    ||| ||||||||||||||||||||| ||||||| |||| ||| |||   |||||| |||||||||| | ||||||  | ||||||| ||||||||||||     
T  12853 catacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaatttttacctttaagaacagtta 12952  T
Q  227 aa---ttgattaa-ttttcagaaattacatattatgactattg-aaagataatcccacccttacctt 288  Q
    ||   | |||||| |||| |||||| | ||||||  ||||||| |||||||||||||||||||||||    
T  12953 aaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 13947 - 13880
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 304  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 13880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 111686 - 111817
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 332  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  111686 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 111784  T
Q  333 ttctctcttggtcttctctccttgcctttgctt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  111785 ttctctcttggtcttctctccttgccttagctt 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 11905 - 11850
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11905 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 23628 - 23562
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    ||||||||||||||||||| | |||||||  ||| ||||||||||||||||||||||||||||||||    
T  23628 gattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 23748 - 23680
Alignment:
Q  113 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 181  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||||||||||| |||||||||||||    
T  23748 gattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaa 23680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 10609 - 10546
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaatt 294  Q
    ||||||||||||||||||| | |||| ||  |||||||||||||||||| ||||||||||||||    
T  10609 gattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttagaatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 73281 - 73347
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    |||||||||||| |||||| | |||||||  |||||||||||||||||||||||||| | |||||||    
T  73281 gattaattttcataaattatacattatgatcattgaaagataatcccacccttacctcataattgca 73347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 717 - 770
Alignment:
Q  237 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 1543 - 1485
Alignment:
Q  231 gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    |||||||||||||||||| ||||||| ||  |||| ||||||||| |||||||||||||    
T  1543 gattaattttcagaaattgcatattaagatcattgcaagataatctcacccttacctta 1485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 45326 - 45198
Alignment:
Q  238 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 335  Q
    |||||| ||||| | ||||||| |||||| ||||| || ||||||||||||||| |||| |||||||    | |||||| ||||  |||   ||||||||    
T  45326 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagatttgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 45228  T
Q  336 tctcttggtcttctctccttgcctttgctt 365  Q
    ||||||||||||||||||| ||||| ||||    
T  45227 tctcttggtcttctctcctagccttagctt 45198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 40586 - 40524
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 297  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| |||||    
T  40586 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 40524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 22646 - 22536
Alignment:
Q  236 attttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaagttctt 334  Q
    |||||||||||||| ||| ||||| |||||| ||||| || |||||||||||| || ||||  ||| |  | ||||||| ||||| ||||||| | ||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgc--agaaatattgcacagcaaaatcggttcctaggctctt 22549  T
Q  335 ctctcttggtctt 347  Q
    |||||||||||||    
T  22548 ctctcttggtctt 22536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 135474 - 135530
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  135474 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 135530  T

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Target: scaffold0924 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 805 - 750
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  805 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 750  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 11342 - 11397
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11342 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11397  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 30858 - 30913
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 290  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  30858 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 30913  T

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Target: scaffold0317 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 1367 - 1441
Alignment:
Q  216 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  1367 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0222 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 16821 - 16875
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  16821 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 116897 - 116951
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 289  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  116897 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

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Target: scaffold0310 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 17644 - 17700
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 291  Q
    ||||||||||||||| | ||||||  |||||| ||||| || |||||||||||||||    
T  17644 aattttcagaaattatacattatggttattgagagatagtctcacccttaccttaga 17700  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 14450 - 14398
Alignment:
Q  235 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 287  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  14450 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

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