View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_low_15 (Length: 317)

Name: NF11460_low_15
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_low_15
NF11460_low_15
[»] chr2 (3 HSPs)
chr2 (19-294)||(32706209-32706479)
chr2 (127-204)||(32718574-32718651)
chr2 (127-204)||(32724979-32725056)
[»] chr6 (1 HSPs)
chr6 (122-206)||(14903439-14903523)
[»] chr5 (4 HSPs)
chr5 (122-206)||(2999658-2999748)
chr5 (19-62)||(3000932-3000975)
chr5 (122-169)||(7432420-7432467)
chr5 (60-106)||(3000803-3000849)
[»] chr8 (1 HSPs)
chr8 (124-168)||(39851723-39851767)
[»] chr4 (1 HSPs)
chr4 (124-168)||(44476235-44476279)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 32706479 - 32706209
Alignment:
Q  19 catcaaataaaaaataaacactacaacacgcaactcaccacccacaaagcgaacacgcttctcttcttgtataactagtgttggaaacacgcttctcttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706479 catcaaataaaaaataaacactacaacacgcaactcaccac----aaagcgaacacgcttctcttcttgtataactagtgttggaaacacgcttctcttc 32706384  T
Q  119 ttctattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaagaataccactca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706383 ttctattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaagaataccactca 32706284  T
Q  219 ctcaatgattgatatgtaggtaaaacattaaacaccgacaatcttaaactatcttgcaatgagctaaacaaaatct 294  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32706283 ctcaatgattgatatgtaggt-aaacattaaacaccgacaatcttaaactatcatgcaatgagctaaacaaaatct 32706209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 32718651 - 32718574
Alignment:
Q  127 aatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcac 204  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  32718651 aatgatttaaatatgtaatcaaggtagaaattgcatcaagccagctctctgagttcactaaataacgatctcatgcac 32718574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 32725056 - 32724979
Alignment:
Q  127 aatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcac 204  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  32725056 aatgatttaaatatgtaatcaaggtagaaattgcatcaagccagctctctgagttcactaaataacgatctcatgcac 32724979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 14903439 - 14903523
Alignment:
Q  122 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaa 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14903439 tattcagtgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaataatgatctcatgcacaa 14903523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 2999748 - 2999658
Alignment:
Q  122 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaat------aaataatgatctcatgcacaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  2999748 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagctagctctctgagttaaataaaataaaataatgatctcatgcacaa 2999658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 3000975 - 3000932
Alignment:
Q  19 catcaaataaaaaataaacactacaacacgcaactcaccaccca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3000975 catcaaataaaaaataaacactacaacacgcaactcaccaccca 3000932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 7432467 - 7432420
Alignment:
Q  122 tattcaatgatttaaatatgtaatgaagctagaaattgcatcaagcta 169  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7432467 tattcaatgatttcaatatgtaatgaagctacaaattgcatcaagcta 7432420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 3000849 - 3000803
Alignment:
Q  60 ccacaaagcgaacacgcttctcttcttgtataactagtgttggaaac 106  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||    
T  3000849 ccacaaagcgaacgcgcttctcttcttgtataactagttctggaaac 3000803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 39851767 - 39851723
Alignment:
Q  124 ttcaatgatttaaatatgtaatgaagctagaaattgcatcaagct 168  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||    
T  39851767 ttcaatgatttaactatgtaatgaagctaaaaattacatcaagct 39851723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 44476279 - 44476235
Alignment:
Q  124 ttcaatgatttaaatatgtaatgaagctagaaattgcatcaagct 168  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  44476279 ttcaatgatttaactatgtaatgcagctacaaattgcatccagct 44476235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University