View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_low_2 (Length: 684)

Name: NF11460_low_2
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_low_2
NF11460_low_2
[»] chr1 (6 HSPs)
chr1 (10-677)||(9804675-9805341)
chr1 (186-618)||(9817777-9818211)
chr1 (337-677)||(9806455-9806792)
chr1 (1-125)||(9817569-9817693)
chr1 (2-128)||(9817451-9817577)
chr1 (10-118)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (189-680)||(11788-12285)
scaffold0432 (1-132)||(11577-11708)
scaffold0432 (10-128)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (186-340)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (561-652)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 10 - 677
Target Start/End: Original strand, 9804675 - 9805341
Alignment:
Q  10 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9804675 tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga 9804774  T
Q  110 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804775 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 9804874  T
Q  210 tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatcttgatcattttgcatgtctttctcta 309  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| |||||||||||||||||||||| |    
T  9804875 tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgtctttctcaa 9804973  T
Q  310 atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9804974 atttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttcttata 9805073  T
Q  410 ctcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcat 509  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9805074 ctcttcaaattccccatcttacctttggggaagagtcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcat 9805173  T
Q  510 ttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcaca 609  Q
    |  | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9805174 tcctatgtacaaaaatttaatataaaatgtgtactagaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcaca 9805273  T
Q  610 atataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtc 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9805274 atataccttgattctcccttttcgcgagtacatgaaataccttccatcttgtcctgttcaatgatgtc 9805341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 186 - 618
Target Start/End: Original strand, 9817777 - 9818211
Alignment:
Q  186 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt 285  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||        ||||     
T  9817777 tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacat--ttttttatcta 9817874  T
Q  286 gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaattta 385  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9817875 gatcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaattta 9817974  T
Q  386 ttatccacagatggatttcttat--actcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtgcttttcattttgttcaac 483  Q
    ||||| ||| ||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9817975 ttatctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatcactagtgcttttcattttgttcaac 9818074  T
Q  484 aagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatatttt 583  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
T  9818075 aagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactagaagtaaatagaaaataacaaatacaagtacataattt 9818174  T
Q  584 aataaccgaataaaacaa--aaatcacaatatacctt 618  Q
    |||||||| |||||| ||  |||||||||||||||||    
T  9818175 aataaccgtataaaaaaaataaatcacaatatacctt 9818211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 337 - 677
Target Start/End: Complemental strand, 9806792 - 9806455
Alignment:
Q  337 tttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacagatggatttcttat---actcttcaaattccccatcttactt 433  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    | | ||| | |||||||   ||||||||||||||||| |||||||    
T  9806792 tttcaaacatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccaccttactt 9806693  T
Q  434 ttggggaagagtcttcctgctcatcactggtg-----cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaattta 528  Q
    | ||| || ||||||||| ||| ||  | |||     || ||||||||||||||||| |||||||||||||||            ||||||||||||| |    
T  9806692 tcggg-aatagtcttcctcctcttctatagtggcctcctcttcattttgttcaacaataattccttttccctt------------gtgtacaaaaattaa 9806606  T
Q  529 agataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaatataccttgattctcc 626  Q
    | |||||||||||| |||||  |||||| |||||||||| |||||||||||||| ||||||| | ||||| |||  ||||||||||||||||||||||||    
T  9806605 atataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaatataccttgattctcc 9806506  T
Q  627 cttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtc 677  Q
    ||||||| ||| || |||||||||||||||||| || ||||||||||||||    
T  9806505 cttttcgtgagcacgtgaaataccttccatcttgtcttgttcaatgatgtc 9806455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9817569 - 9817693
Alignment:
Q  1 acaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcac 100  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||| |||||||||||||| || |||  |    
T  9817569 acaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacctctctcctaccaacattgc 9817668  T
Q  101 tgagatcgacatcgatcagaaaaaa 125  Q
    |||||||||||||||||||||||||    
T  9817669 tgagatcgacatcgatcagaaaaaa 9817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 9817451 - 9817577
Alignment:
Q  2 caaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcact 101  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||  ||| | ||||||||||||||||| ||||||   |    
T  9817451 caaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcctaccaccataggt 9817550  T
Q  102 gagatcgacatcgatcagaaaaaagaa 128  Q
    |||||||||||| |||| | |||||||    
T  9817551 gagatcgacatcaatcaaacaaaagaa 9817577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
Q  10 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 109  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||  ||||| |||||||||||||| || ||||||| ||| ||||||    
T  9817341 tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga 9817439  T
Q  110 catcgatca 118  Q
    |||||||||    
T  9817440 catcgatca 9817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 189 - 680
Target Start/End: Original strand, 11788 - 12285
Alignment:
Q  189 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaactttttt-catatannnnnnnatcttga 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||| || ||        ||||  |    
T  11788 ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacat--tgttttatctata 11885  T
Q  288 tcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttatt 387  Q
    | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  11886 taattttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttatt 11985  T
Q  388 atccacagatggatttctta---tactcttcaaattccccatcttacttttggggaagagtcttcctgctcatcactggtg-----cttttcattttgtt 479  Q
    ||  ||| || |||||||||   |||||||||||||||||||||||| ||| |||||||||||||||  | |||||| |||     ||||||||||||||    
T  11986 atgtacacatagatttcttattctactcttcaaattccccatcttac-tttagggaagagtcttcctcgttatcactagtggcatccttttcattttgtt 12084  T
Q  480 caacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacata 579  Q
    ||||||||||||||| |||||| | ||||||   |||||| ||||||||| |||||||| ||||||||||||||||  |||||||||| | |||||||||    
T  12085 caacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataacaaacataagtacata 12183  T
Q  580 ttttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatgatgtcc 678  Q
     || ||||||| | ||||| || ||||||||| |||| ||||||| ||||||||  ||||||||| ||||||||||||||| || || ||||||||||||    
T  12184 attgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatcttgtcatgatcaatgatgtcc 12283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11577 - 11708
Alignment:
Q  1 acaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcac 100  Q
    |||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || |||||   ||| | |||||||||||| || ||||||| |    
T  11577 acaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacctctctcataccaccatcgc 11676  T
Q  101 tgagatcgacatcgatcagaaaaaagaaccat 132  Q
    ||||||| ||||||||  ||||||||||||||    
T  11677 tgagatcaacatcgattggaaaaaagaaccat 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 11467 - 11585
Alignment:
Q  10 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 109  Q
    ||||||||||||||||||| |||||| ||||| || | ||| | |||||||||||   || || ||||||||||||| ||| ||| | | ||||||||||    
T  11467 tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga 11566  T
Q  110 catcgatcagaaaaaagaa 128  Q
    ||| ||||| | |||||||    
T  11567 cattgatcaaacaaaagaa 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 186 - 340
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
Q  186 tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatctt 285  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| ||        ||||     
T  42778900 tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacat--ttctttatcta 42778804  T
Q  286 gatcattttgcatgtctttctctaatttgtggttgtcttttatgtgagtggtttc 340  Q
    |||||||||||| | |||||| | ||||||||||| ||||||| |||||||||||    
T  42778803 gatcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc 42778749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 652
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
Q  561 taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt 652  Q
    ||||||| | ||||| |||||| ||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  2371052 taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt 2371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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