View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11460_low_3 (Length: 657)

Name: NF11460_low_3
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11460_low_3
NF11460_low_3
[»] chr7 (1 HSPs)
chr7 (1-639)||(5961-6605)
[»] chr8 (3 HSPs)
chr8 (8-126)||(10028816-10028934)
chr8 (68-126)||(21136606-21136664)
chr8 (64-126)||(10028670-10028732)
[»] chr3 (2 HSPs)
chr3 (14-143)||(45965752-45965881)
chr3 (88-124)||(47064316-47064352)
[»] chr6 (2 HSPs)
chr6 (6-45)||(15965709-15965748)
chr6 (58-106)||(17437564-17437612)
[»] chr1 (3 HSPs)
chr1 (64-106)||(7790409-7790451)
chr1 (88-126)||(10377568-10377606)
chr1 (64-126)||(27293299-27293361)
[»] scaffold0154 (1 HSPs)
scaffold0154 (57-126)||(6211-6280)
[»] scaffold0022 (1 HSPs)
scaffold0022 (73-126)||(122548-122601)
[»] chr5 (1 HSPs)
chr5 (79-123)||(32508812-32508856)
[»] chr4 (1 HSPs)
chr4 (66-126)||(5162853-5162913)


Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Original strand, 5961 - 6605
Alignment:
Q  1 aaacaatagtttttcaattaggtccatgtttttatgtttttgtcatataataacacacttaactgagaaacgtttgataaagataaagactaatttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5961 aaacaatagtttttcaattaggtccatgtttttatgtttttgtcatataataacacacttaactgagaaacgtttgataaagacaaagactaatttgaaa 6060  T
Q  101 tattaacagggtcaaagactaatttgttagctacttacaaatatagataccaaattaatggtttattagacataatattgagtacaaaaattggttattt 200  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6061 tattaacaaagtcaaagactaatttgttagctacttacaaatatagataccaaattaatggtttattagacataatattgagtacaaaaattggttattt 6160  T
Q  201 ctataatgaagatgaggacaatgaaaggtgctcatttcagccgtatatagatccacttatatatgaggggtattgtcactttcacttcacttgaatagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6161 ctataatgaagatgaggacaatgaaaggtgctcatttcagccgtatatagatccacttatatatgaggggtattgtcactttcacttcacttgaattgag 6260  T
Q  301 tctagttcgttagtatcttcatttacgctactggttgattttggaagggggnnnnnnncaccaaaaggaggagctatttagaattggaaataaagttaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  6261 tctagttcgttagtatcttcatttacgctactggttgattttggaaggggaaaaaaaacaccaaaaggaggagctatttagaattggaaataaagttaat 6360  T
Q  401 ttacttagagaaaagtggaatatatacattgtaagtttcgtataatagaatgttgttttaaagatgtgggaagtggcaa------agcatgagcatgagc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  6361 ttacttagagaaaagtggaatatatacattgtaagtttcgtataatagaatgttgttttaaagatgtgggaagtggcaaagcatgagcatgagcatgagc 6460  T
Q  495 attgagcatagacattgttggagagaatatatagatagatgatatcaaagaaaagggaaggaactagctggcagcctagcacacaaaaaagacatatctt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6461 attgagcatagacattgttggagagaatatatagatagatgatatcaaagaaaagggaaggaactagctggcagcctagcacacaaaaaagacatatctt 6560  T
Q  595 ttcttaaagattggttacattgatggtccttttgaggaagtttct 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6561 ttcttaaagattggttacattgatggtccttttgaggaagtttct 6605  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 10028816 - 10028934
Alignment:
Q  8 agtttttcaattaggtccatgtttttatgtttttgtcatataataacacacttaactgagaaacgtttgataaagataaagactaatttgaaatattaac 107  Q
    ||||| |||||||||||||||| |||||||||||||||  |||| | | ||  || ||| |||| ||||| ||||| || ||||| |||||||||||||     
T  10028816 agtttctcaattaggtccatgtctttatgtttttgtcacttaatgagagaccaaattgaaaaacctttgaaaaagacaacgactagtttgaaatattaat 10028915  T
Q  108 agggtcaaagactaatttg 126  Q
    |  ||||||||||||||||    
T  10028916 aaagtcaaagactaatttg 10028934  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 21136664 - 21136606
Alignment:
Q  68 aaacgtttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    |||| ||||| |||||||| ||||| ||||||||||||| || ||||||||||||||||    
T  21136664 aaacttttgacaaagataaggactattttgaaatattaatagagtcaaagactaatttg 21136606  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 10028732 - 10028670
Alignment:
Q  64 tgagaaacgtttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    |||||||| ||||  || ||||||||||||||||||||||||| || ||||  ||||||||||    
T  10028732 tgagaaacttttggcaaggataaagactaatttgaaatattaatagagtcagtgactaatttg 10028670  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 45965752 - 45965881
Alignment:
Q  14 tcaattaggtccatgtttttatgtttttgtcatataataacacacttaactgagaaacgtttgataaagataaagactaatttgaaatattaacagggtc 113  Q
    ||||||| |||||| | ||||||||||||| |||| | ||   || ||| |||||||| ||||| ||||||||  |||| ||||||||||||| || |||    
T  45965752 tcaattatgtccatatctttatgtttttgttatatgacaaaggacctaattgagaaacttttgaaaaagataataactagtttgaaatattaatagagtc 45965851  T
Q  114 aaagactaatttgttagctacttacaaata 143  Q
    | | |||||||||  ||  |||||||||||    
T  45965852 acaaactaatttgagagtgacttacaaata 45965881  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 47064352 - 47064316
Alignment:
Q  88 gactaatttgaaatattaacagggtcaaagactaatt 124  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  47064352 gactagtttgaaatattaacagagtcaaagactaatt 47064316  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 15965748 - 15965709
Alignment:
Q  6 atagtttttcaattaggtccatgtttttatgtttttgtca 45  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  15965748 atagtttttcaattaggttcatgtctttatgtttttgtca 15965709  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 17437612 - 17437564
Alignment:
Q  58 cttaactgagaaacgtttgataaagataaagactaatttgaaatattaa 106  Q
    ||||| |||||||| ||||||||||| ||||||||| |||| |||||||    
T  17437612 cttaattgagaaacttttgataaagacaaagactaaattgatatattaa 17437564  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 7790409 - 7790451
Alignment:
Q  64 tgagaaacgtttgataaagataaagactaatttgaaatattaa 106  Q
    |||||||| ||||||||||||| | ||||||||||||||||||    
T  7790409 tgagaaacttttgataaagatagaaactaatttgaaatattaa 7790451  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 10377568 - 10377606
Alignment:
Q  88 gactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  10377568 gactaatttgaaatattaatagagtcaaagactaatttg 10377606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 27293361 - 27293299
Alignment:
Q  64 tgagaaacgtttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    |||||||| ||||  ||||||||  |||||||||||||||||| || |||| |||||||||||    
T  27293361 tgagaaacttttggcaaagataagaactaatttgaaatattaatagagtcagagactaatttg 27293299  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 6211 - 6280
Alignment:
Q  57 acttaactgagaaacgtttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    |||||| |||||||| ||| | ||||  ||| |||| ||||||||||||| || ||||||||||||||||    
T  6211 acttaattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttg 6280  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 122548 - 122601
Alignment:
Q  73 tttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    ||||| ||||| |||||||| ||||||||||||| || |||| |||||||||||    
T  122548 tttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttg 122601  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 32508856 - 32508812
Alignment:
Q  79 aaagataaagactaatttgaaatattaacagggtcaaagactaat 123  Q
    ||||||||||||||||||||||||| || ||||||| | ||||||    
T  32508856 aaagataaagactaatttgaaatatcaagagggtcatacactaat 32508812  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 5162913 - 5162853
Alignment:
Q  66 agaaacgtttgataaagataaagactaatttgaaatattaacagggtcaaagactaatttg 126  Q
    |||||| ||||| ||||| | |||||||||||||||||||| || || | |||||||||||    
T  5162913 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttg 5162853  T

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