View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11460_low_5 (Length: 470)
Name: NF11460_low_5
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11460_low_5 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 35534580 - 35534135
Alignment:
| Q |
10 |
gcagagagtgtaggaatgaagcaatgcttcaaagagatttgaattggtggtgatgattttgctgaaaatggattgtgcggttttaaagtttcgattttta |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35534580 |
gcagagagtgtaggaatgaagcaatgattcaaagagatttgaattggtggtgatgattttgctgaaaatggattgtgcggttttaaagtttcgattttta |
35534481 |
T |
|
| Q |
110 |
gtgagaatgtgaagaaggaaggaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacagcgtcgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35534480 |
gtgagaatgtgaagaaggaaggaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacggcgtcgt |
35534381 |
T |
|
| Q |
210 |
tttggagttttaagagaatgtgttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35534380 |
tttggagttttaagagaatgtgttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaa |
35534281 |
T |
|
| Q |
310 |
aatgttgatgaaatctaggtcttgtccttttggttgtggaagcgttcgatgaggtataggtaggtaaggagagtgtgtttttgtgtgggatgggattgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35534280 |
aatgttgatgaaatctaggtcttgtccttttggttgtggaagtgttcgatgaggtataggtaggtaaggagagtgtgtttttgtgtgggattggattgat |
35534181 |
T |
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| Q |
410 |
gttgttgaaaattgatgaaatcgaatggttttcttcatcttaaaag |
455 |
Q |
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| T |
35534180 |
gttgttgaaaattgatgaaatcgaatggtttttttcatcttaaaag |
35534135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 335
Target Start/End: Original strand, 52438704 - 52438907
Alignment:
| Q |
131 |
gaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacagcgtcgttttggagttttaagagaatgt |
230 |
Q |
| |
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|||| |||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||| || | ||| | || |||||| ||||||||||| |||| |
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| T |
52438704 |
gaataggtatgaagggtgtgagaattaaagttatgggtttggatccaattgaagaacttgagggaaataaccgtgtggttttgaagttttaagaggatgt |
52438803 |
T |
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| Q |
231 |
gttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaaaatgttgatgaaatctaggtc |
330 |
Q |
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| |||||||||||||||| | ||||| || ||| |||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||| | || |
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| T |
52438804 |
gctggattttgaatggggcaagagtttttgataaaagagtgagttttt-tcattgagagtggattaagtgattgtggaaaatgttaatgaaatcttgatc |
52438902 |
T |
|
| Q |
331 |
ttgtc |
335 |
Q |
| |
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||||| |
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| T |
52438903 |
ttgtc |
52438907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 131 - 335
Target Start/End: Complemental strand, 36033 - 35830
Alignment:
| Q |
131 |
gaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacagcgtcgttttggagttttaagagaatgt |
230 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| || | ||| || |||||| ||||||||||| |||| |
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| T |
36033 |
gaatgggtatgaagggtgtgagaattaaagttatgggtttggacccaattgaagaacttgagggaaataaccatgtggttttgaagttttaagaggatgt |
35934 |
T |
|
| Q |
231 |
gttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaaaatgttgatgaaatctaggtc |
330 |
Q |
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| T |
35933 |
gctggattttgaatgaggcaagagtttttgataaaagagtgagttttt-ttattgagagtggattaagtgattgtcgaaaatgttaatgaaatcttggtc |
35835 |
T |
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| Q |
331 |
ttgtc |
335 |
Q |
| |
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||||| |
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| T |
35834 |
ttgtc |
35830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 131 - 335
Target Start/End: Original strand, 14206207 - 14206410
Alignment:
| Q |
131 |
gaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacagcgtcgttttggagttttaagagaatgt |
230 |
Q |
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||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||||| || | ||| | || ||||| ||||||||||| |||| |
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| T |
14206207 |
gaatgggtatgaagggtgtgagaattaaagttacgggtttggatccaattgaagaacttgagggaaataaccgtgtggtttttaagttttaagaggatgt |
14206306 |
T |
|
| Q |
231 |
gttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaaaatgttgatgaaatctaggtc |
330 |
Q |
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| |||||||||||||||| | |||| || ||| |||||||||||| |||||||||||||| |||||| |||| |||||||| ||||||||| |||| |
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| T |
14206307 |
gctggattttgaatggggcaagagtttctgataaaagagtgagttttt-tcattgagagtggattaagtgattgtgaaaaatgttaatgaaatcttggtc |
14206405 |
T |
|
| Q |
331 |
ttgtc |
335 |
Q |
| |
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||||| |
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| T |
14206406 |
ttgtc |
14206410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 131 - 335
Target Start/End: Original strand, 14213955 - 14214158
Alignment:
| Q |
131 |
gaatgggtatgaagggtatgagaattagggttatgggtttggacccaattgaagaatttgagagatagaacagcgtcgttttggagttttaagagaatgt |
230 |
Q |
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||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||||| || | ||| | || ||||| ||||||||||| |||| |
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| T |
14213955 |
gaatgggtatgaagggtgtgagaattaaagttacgggtttggatccaattgaagaacttgagggaaataaccgtgtggtttttaagttttaagaggatgt |
14214054 |
T |
|
| Q |
231 |
gttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgactgtggaaaatgttgatgaaatctaggtc |
330 |
Q |
| |
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| |||||||||||||||| | |||| || ||| |||||||||||| |||||||||||||| |||||| |||| |||||||| ||||||||| |||| |
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| T |
14214055 |
gctggattttgaatggggcaagagtttctgataaaagagtgagttttt-tcattgagagtggattaagtgattgtgaaaaatgttaatgaaatcttggtc |
14214153 |
T |
|
| Q |
331 |
ttgtc |
335 |
Q |
| |
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||||| |
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|
| T |
14214154 |
ttgtc |
14214158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 4962630 - 4962513
Alignment:
| Q |
204 |
cgtcgttttggagttttaagagaatgtgttggattttgaatggggttaaggttttagagaaaggagtgagtttttcccattgagagtggatgaagtgact |
303 |
Q |
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||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || || ||||||||||||| |||||||||||||| ||||| | |
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| T |
4962630 |
cgtcgttttggagttttaagacaatgtgttgaattctgaatggggttaaggtttttgattaaagagtgagtttttcacattgagagtggattaagtgttt |
4962531 |
T |
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| Q |
304 |
gtggaaaatgttgatgaa |
321 |
Q |
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|||||||||||| ||||| |
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| T |
4962530 |
gtggaaaatgtttatgaa |
4962513 |
T |
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