View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11460_low_9 (Length: 420)
Name: NF11460_low_9
Description: NF11460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11460_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 40568819 - 40569220
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
40568819 |
ctactgacaggaaagaaggcactatctttgggcaggccagaggttgatagaaaccttgccgcgtactttgtttcttcaatgaaagagggtcggttacttc |
40568918 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40568919 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
40569018 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40569019 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttg |
40569118 |
T |
|
| Q |
318 |
cttaaaacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaacctgatgtccatctcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |||| |
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|
| T |
40569119 |
cttaaaacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcat |
40569218 |
T |
|
| Q |
418 |
tg |
419 |
Q |
| |
|
|| |
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|
| T |
40569219 |
tg |
40569220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 40573420 - 40573821
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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|
| T |
40573420 |
ctactgacaggaaagaaagcgctatcttttgggaggcctgaggttgatagaaaccttgccgcatactttgtttcttcgatgaaacagggtcggttacttc |
40573519 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
||||||||||||||| ||||||| | || |||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
40573520 |
atattttggacaaaaatatagatgaggcaaatattgagcaactaaaagaggttgcccatattgcagaacggtgtttaagggtgaagggcgaggacagacc |
40573619 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttg |
317 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
40573620 |
aaccatgaaagaagtggcaatggaacttgagggaatattagttgttgaagagcgacgttggggaagcgacaatttatcttcagaagaggctgaaaacttg |
40573719 |
T |
|
| Q |
318 |
cttaaaacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaacctgatgtccatctcat |
417 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||| || || |||| |
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|
| T |
40573720 |
cttaaaacagcacggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcat |
40573819 |
T |
|
| Q |
418 |
tg |
419 |
Q |
| |
|
|| |
|
|
| T |
40573820 |
tg |
40573821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 40579877 - 40580261
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
40579877 |
ctactaacgggaaagaaggcactatcttttggcaggccagaggtagatagaaacctttccgcatactttgtttcttcaatgaaacagggtcggttacttc |
40579976 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
||||||||||||||| ||||||| | | ||||||||||||| || |||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40579977 |
atattttggacaaaaatatagatgagacaaatattgagcaacttaaagaggttgccgatattgcagaacggtgtttaagggtgaagggagaggacagacc |
40580076 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttg |
317 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||||||||||||| ||||||| ||||||||||| ||| |||| |||||||||||||||||||| ||| |
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|
| T |
40580077 |
aactatgaaagaagtggcaatggaacttgagggaatattagttattgaagagttccgttggggaagtgactatttgtcttcagaagagactgaaaacttg |
40580176 |
T |
|
| Q |
318 |
cttaaaacagcacggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaacc |
402 |
Q |
| |
|
|| ||||||||| ||| | ||||| ||| |||||| | |||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
40580177 |
ctcaaaacagcagaatccgtaaaaaatgttcaagatggtattggtggaagtgatattaattcttctggttcatatagcttaaacc |
40580261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 40598327 - 40598578
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
||||| |||||| | ||||| ||||||| |||||||||||||| |||||||||||||| ||||| || |||| || ||||||| || ||||||| |
|
|
| T |
40598327 |
ctactaacaggagaaaaggcattatcttttggcaggccagaggtagatagaaaccttgcaatgtactttgtgtcttggattaaagaggatcaattacttc |
40598426 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
||||| | ||||||| ||||||| | ||||||| || |||||||| ||||| || |||| |||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
40598427 |
atattctagacaaaaatatagatgagaaaaatattgaacatctaaaggaagttgccctaattgcagaaaggtgtttaagggtgaagagtgaggaaagacc |
40598526 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagag |
269 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
40598527 |
aaccatgaaagaagtggcaatgggactagagggaatattagttactgaagag |
40598578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 40591725 - 40591976
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
||||||||||||||||| || |||| || |||| |||| ||| || |||| |||||| ||||| ||||||||||||||||| | ||||||| ||| |
|
|
| T |
40591725 |
ctactgacaggaaagaaagcactatgttatagcagaccagtggtagaaagaagccttgcgatgtactttgtttcttcaatgaaagaagatcggttagttc |
40591824 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
||||| |||||| | || ||| | || ||||||| |||||||| ||||| || |||| |||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
40591825 |
atattctggacagcaacatcgatgcgggaaatgttgagcatctaaaggaagttgccctaattgcagaaaggtgtttaagggtgaacagtgaggaaagacc |
40591924 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagag |
269 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||| ||||||| |
|
|
| T |
40591925 |
atccatgaaagaagtggcaatggaactggaaggaatattagttattgaagag |
40591976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 40602379 - 40602627
Alignment:
| Q |
22 |
tgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttcatat |
121 |
Q |
| |
|
||||||||||||| || |||| ||| |||||||||| || || |||| |||||| | || ||||||||||||||||| | || ||| |||||||| |
|
|
| T |
40602379 |
tgacaggaaagaaagcactatgttttagcaggccagatgtagaaagaagccttgcaatgcattttgtttcttcaatgaaagaagatcagttgcttcatat |
40602478 |
T |
|
| Q |
122 |
tttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacccacc |
221 |
Q |
| |
|
| |||||| || || ||| | ||| |||| || |||||||| ||||| | |||| |||| ||||||||| | |||| ||||||| ||||| ||| |
|
|
| T |
40602479 |
tctggacagcagcattgattgggaagatgttgatcatctaaaggaagttgccataattgcagaaaggtgtttaaagatgaacagtgaggaaagaccgacc |
40602578 |
T |
|
| Q |
222 |
atgaaagaagtggcaatggaattagagggaatattagttagtgaagagc |
270 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
40602579 |
atgaaagaagtggcagtggaactagagggaatattagttattgaagagc |
40602627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 2014917 - 2014652
Alignment:
| Q |
18 |
ctactgacaggaaagaaggcgctatctttgggcaggccagaggttgatagaaaccttgccgcatacttggtttcttcaatgaaagagggtcggttacttc |
117 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||| | |||||||||||||| ||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
2014917 |
ctactggcaggaaagaaggcactatcttttagcaggccagagttggatagaaaccttgcattgtactttgtttcttcaatgaaagatggtcagttacttc |
2014818 |
T |
|
| Q |
118 |
atattttggacaaaagtatagataatgctgatattgagcaactaaaggaggttgctcttattgtagaacggtgtttaagggtgaagggtgaggacagacc |
217 |
Q |
| |
|
||||||||||||||| ||| || | || | ||||||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
2014817 |
atattttggacaaaaatattgacgaggcgaacattgagcaactaaaggaggttgcccttattgcagaaaggtgtttacgggtgaagggtgaggaaagacc |
2014718 |
T |
|
| Q |
218 |
caccatgaaagaagtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaag |
283 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2014717 |
caccatgaaagaagtggcagcggaactggagggaatattagttattgaagagcaccgttggggaag |
2014652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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