View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_high_11 (Length: 380)
Name: NF11461_high_11
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_high_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 39 - 380
Target Start/End: Original strand, 27099331 - 27099673
Alignment:
| Q |
39 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
138 |
Q |
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| T |
27099331 |
gttaagttattgtgtgcatttagtgtttatgggaactatataatgaatgaatgagggaccatgatgagtgcatgcactcaaattttgacgcgtttacaca |
27099430 |
T |
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| Q |
139 |
gtcaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaggaattaaaaatagcattgaaatttaaac |
238 |
Q |
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| T |
27099431 |
gccaacacatctatgccgttgaatcaagattaaaccgtctaaacttttaatttggtattttctatttaaaaagaattaaaaatagcattgaaatttaaac |
27099530 |
T |
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| Q |
239 |
catttaatcttgatccaacgaccacgaatgtattgtctacatgaatgtttcaaaattttgatggaagg-aaataccattccttgaaggaggtcatattaa |
337 |
Q |
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| T |
27099531 |
catttaatcttaatccaacgaccacgaatgtattgtctacatgaatgcttcaaaattttgatggaaggaaaataccattccttgaaggaggtcatattaa |
27099630 |
T |
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| Q |
338 |
ttttgaaatgacatgaaagggtgtggttggataggatatttac |
380 |
Q |
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| T |
27099631 |
ttttgaaatgacatgaaagggtgtggttggataggatatttac |
27099673 |
T |
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