View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11461_high_12 (Length: 374)

Name: NF11461_high_12

Description: NF11461

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11461_high_12

[»] chr4 (4 HSPs)

[»] chr8 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 352; E-Value: 0

Query Start/End: Original strand, 11 - 374

Target Start/End: Complemental strand, 2010982 - 2010619

Alignment:

Q	11	cagagaggtgtctatccttcatagatcataagagtcgagaagtgagaaccctttgtgttctgttttcaaccaactccatgacctgtatatgacctttcca	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2010982	cagagaggtgtctatccttcatagatcataagagtcgagaagtgagaaccctttgtgttctgttttcaaccaactccatgacctgtatatgacctttcca	2010883	T

Q	111	aatagtccaatcctctatactagaataacaagaagttggtggacctacaaattgtagtaaacatgttataattgtaaatgtaatataaattattgatttt	210	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	2010882	aatagtccaagcctctatactagaataacaagaagttggtggacctacaaattgtagtaaacatgttataattgtaaatgtaatataaattgttgatttt	2010783	T

Q	211	tcatcattagttaatacttcatattatttactttgtcttataaggtgaattactcacttcagagtactgcataccatatttctatattacctactattta	310	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2010782	tcatcattagttaatacttcatattatttactttgtcttataaggtgaattactcatttcagagtactgcataccatatttctatattacctactattta	2010683	T

Q	311	gcataatttcaaattacttagtatactattttgtatacaattgtcgaagaggatgttgttatgc	374	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2010682	gcataatttcaaattacttagtatactattttgtatacaattgtcgaagaggatgttgttatgc	2010619	T

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Target: chr4; HSP #2

Raw Score: 51; E-Value: 4e-20

Query Start/End: Original strand, 260 - 354

Target Start/End: Original strand, 1739566 - 1739660

Alignment:

Q	260	ttactcacttcagagtactgcataccatatttctatattacctactatttagcataatttcaaattacttagtatactattttgtatacaattgt	354	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	1739566	ttactcatttcagaaaactgcttaccatatttctatactacctacttttcagcaaaatttcaaattacttagtactctattttgtatccaattgt	1739660	T

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Target: chr4; HSP #3

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 72 - 107

Target Start/End: Original strand, 1739321 - 1739356

Alignment:

Q	72	gttttcaaccaactccatgacctgtatatgaccttt	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1739321	gttttcaaccaactccatgacctgtatatgaccttt	1739356	T

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Target: chr4; HSP #4

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 170 - 218

Target Start/End: Original strand, 1739510 - 1739558

Alignment:

Q	170	aacatgttataattgtaaatgtaatataaattattgatttttcatcatt	218	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	1739510	aacatgttatacttgtatatgtaatataaattttttatttttcatcatt	1739558	T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 44; E-Value: 6e-16

Query Start/End: Original strand, 315 - 374

Target Start/End: Complemental strand, 26228534 - 26228475

Alignment:

Q	315	aatttcaaattacttagtatactattttgtatacaattgtcgaagaggatgttgttatgc	374	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	26228534	aatttcaaattacttagtatactattttgaatagaattgttgaagaggatgttggtatgc	26228475	T

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