View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_high_15 (Length: 282)
Name: NF11461_high_15
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2010629 - 2010363
Alignment:
| Q |
1 |
tgttgttatgcatcttttctctcttgttttgaggtataagtgttgttgcgattcatttgaagcgtatgtctgacaactgcagatagtccaaaatatgaac |
100 |
Q |
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| T |
2010629 |
tgttgttatgcatcttttctctcttgttttgaggtataagtgttgttgcgattcatttcaagcgtatgtctgacaactgcaggtagtccaaaatatgaac |
2010530 |
T |
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| Q |
101 |
acttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttggattatgaatcggtttactctgcgattgttggatgcagtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2010529 |
acttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttggattatgaatcggtttactctgcgattgttggatgcagtgc |
2010430 |
T |
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| Q |
201 |
agttttccatgttgctagccctgtaccttcaacagttgtacctaatcccgaggtaacgtttctaatt |
267 |
Q |
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| T |
2010429 |
agttttccatgttgctagccctgtaccttcaacagttgtacctaatcccgaggtaacgtttctaatt |
2010363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 1739658 - 1739924
Alignment:
| Q |
1 |
tgttgttatgcatcttttctctc-ttgttttgaggtataagtgttgttgcgattcatttgaagcgtatgtctgacaactgcagatagtccaaaatatgaa |
99 |
Q |
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| T |
1739658 |
tgttgatatgcatcttttctctcattgttttgaggtacaaatgttgttgtgattcatttgaagtgtatgtctgacaactgcaggtagtccgaaatatgaa |
1739757 |
T |
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| Q |
100 |
cacttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttggattatgaatcggtttactctgcgattgttggatgcagtg |
199 |
Q |
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| T |
1739758 |
cacttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttggattacgaatcagtttactcggcaattgttggatgcagtg |
1739857 |
T |
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| Q |
200 |
cagttttccatgttgctagccctgtaccttcaacagttgtacctaatcccgaggtaacgtttctaat |
266 |
Q |
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| T |
1739858 |
cagttttccatgttgctagccctgtaccttcaacagttgtacctaatcctgaggtaatgtttctaat |
1739924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 26228485 - 26228222
Alignment:
| Q |
1 |
tgttgttatgcatcttttctctc-ttgttttgaggtataagtgttgttgcgattcatttgaagcgtatgtctgacaactgcagatagtccaaaatatgaa |
99 |
Q |
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||||| ||||||||||||||||| || ||| |||||| || ||||||||||||||||||| |||||||||| ||||| || ||| || ||||||||| |
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| T |
26228485 |
tgttggtatgcatcttttctctcattctttcgaggtacgag---tgttgcgattcatttgaagtgtatgtctgaaaactgtaggtagcccgaaatatgaa |
26228389 |
T |
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| Q |
100 |
cacttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttggattatgaatcggtttactctgcgattgttggatgcagtg |
199 |
Q |
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|||||| | |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
26228388 |
cacttgttaaaactggataaagcttatgagaaccttacactcttcaaagcggatatcttggattatgaatcagtttactctgcaattgttggatgcagtg |
26228289 |
T |
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| Q |
200 |
cagttttccatgttgctagccctgtaccttcaacagttgtacctaatcccgaggtaacgtttctaat |
266 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
26228288 |
cagttttccatgctgctagccctgtaccttcaacagttgtacctaatcctgaggtaacatttctaat |
26228222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 7560071 - 7560165
Alignment:
| Q |
65 |
tatgtctgacaactgcagatagtccaaaatatgaacacttgctgaaactggaaaaagcttctgagaaccttacactcttcaaagcagatatcttg |
159 |
Q |
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|||||||||| ||||||| || || ||||||||||||||||||||| | || | ||||||||| ||||||||| |||||||| ||||| ||||| |
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| T |
7560071 |
tatgtctgaccactgcaggtaatcggaaatatgaacacttgctgaaatttgagagagcttctgaaaaccttacattcttcaaaacagatgtcttg |
7560165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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