View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_high_3 (Length: 634)
Name: NF11461_high_3
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_high_3 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: scaffold0314 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Original strand, 11213 - 11815
Alignment:
| Q |
19 |
atccacaccatgaagacatagagttgccacctgagattctgtaacaagtcatatgtaacttatcaatattaatatactgttagccatatattaaaggata |
118 |
Q |
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| T |
11213 |
atccacaccatgaagacatagagttgccacctgagattctgtaacaagtcatatgtaacttatcaatattaatatactgttagtcatatattaaaggata |
11312 |
T |
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| Q |
119 |
acctagaaatattttcttaatttaagtataatgataataaacttgaaaactacaacaggtgtgatgacccaatcattgagcctaatgcacacaagtataa |
218 |
Q |
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| T |
11313 |
acctagaaatattttcttaatttaagtataatgacaataaacttgaaaactacaacaggtgtgatgacccaatcattgagcctaatgcacacaagtataa |
11412 |
T |
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| Q |
219 |
cttctagaaggttatagaagctgaaggaataaaagttgggatatccctgaattttagggacttttctgtgacaatagagaggaaagggtaatgtgtagct |
318 |
Q |
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| T |
11413 |
cttctagaaggttatagaagctgaaggaataaaagttgggatatccctgaattttagggacttttctgtgacaatagagaggaaagggtaatgtgtagct |
11512 |
T |
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| Q |
319 |
cattgagaatgtttttagaatctgtaaggaaggattcatcaatagtttaagggttcattgaacactggtttttcccctcattctctgttttcaccattgt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11513 |
cattgagaatgtttttagaatctgtaaggaaggattcctcaatagtttaagggttcattgaacactggtttttcccctcattctctgttttcaccattgt |
11612 |
T |
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| Q |
419 |
agagctttgagctcaccaatttccaattcaacagtaaacagtttatttacctaaagttatggtttctgagttcttctgctaccatcgtatcagtatttca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613 |
agagctttgagctcaccaatttccaattcaacagtaaacagtttatttacctaaagttatggtttctgagttcttctgctaccatcgtatcagtatttca |
11712 |
T |
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| Q |
519 |
aaagagttaaacaccattaaagagaaggtgttgatttaatcaaacaattttgattgcaggtcatattttgccttttaatgcggtatccaaattgtaactg |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11713 |
aaagagttaaacaccattaaagagaaggtgttgatttaatcaaacaattttgattgcaggtcatatttttccttttaatgcggtatccaaattgtaactg |
11812 |
T |
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| Q |
619 |
ttc |
621 |
Q |
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| T |
11813 |
ttc |
11815 |
T |
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