View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_high_4 (Length: 590)
Name: NF11461_high_4
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 320 - 586
Target Start/End: Original strand, 10991604 - 10991870
Alignment:
| Q |
320 |
ggtaccacttgaactggactaacccacaagctattagaatacgatatatcattccgccatctaaaagtttcagcacttccttttttaactacctcattca |
419 |
Q |
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| T |
10991604 |
ggtaccacttgaactggtctaacccacaagctattagaatacgatatatcatttcgccatctaaaagtttcagcacttccttttttaactacctcattca |
10991703 |
T |
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| Q |
420 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactcttctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttc |
519 |
Q |
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| T |
10991704 |
ttgttggattgagtctccttttggattgaacaaccaatttaaactctcctaccaatttgattttgtgcatgcaatatcctaggctttgatgcatcctttc |
10991803 |
T |
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| Q |
520 |
tcataaaaacatatttgagatacagtagtatttgctccttgacattatgatgctttaagttactctg |
586 |
Q |
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| T |
10991804 |
tcataaaaacatatttgagatacagtagtatttgctccttgacattatgatgctttaagttactctg |
10991870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 89 - 308
Target Start/End: Original strand, 10991113 - 10991332
Alignment:
| Q |
89 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacagatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
188 |
Q |
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| T |
10991113 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacacatctctttcaatacatcatatacgtctttgaggcagctatcaaaatattt |
10991212 |
T |
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| Q |
189 |
tccaaacatctaaaaatcatccatcgagaattcaatgttcttctaaatcaagtatgagaatatttgaaagaattcatctttgaaacattgttactgcatt |
288 |
Q |
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| T |
10991213 |
tccaaacgtctaaaaatcatccatcgagaattcaatgttcttctaaatcaagcatgagaatatttgaaagaattcatctttaaaacattgttagtgcatt |
10991312 |
T |
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| Q |
289 |
gcacaatctaaaggacattc |
308 |
Q |
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| T |
10991313 |
gcacaatctaaaggacattc |
10991332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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