View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_1 (Length: 743)
Name: NF11461_low_1
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 307 - 724
Target Start/End: Original strand, 12101292 - 12101709
Alignment:
| Q |
307 |
cttcaaccttaaggataaggttgattttaatggtggtggtaatgttatgataccaataaaataaaaattatgtcatcaaaggagagtcactaaaatggtt |
406 |
Q |
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| T |
12101292 |
cttcaaccttaaggataagattgattttaatgatggtggtaatgttatgataccaataaaataaaaattatgtcatcaaaggagagtcactaaaatggtt |
12101391 |
T |
|
| Q |
407 |
cgagaaatggaatctgtgtcggttgattcaataattaagggaagataaccaactgaaaatcgctgtaaagaggaaggatgaattataactggacctttcg |
506 |
Q |
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| T |
12101392 |
cgagaaatggaatatgtgtcggttgattcaataattaagggaagataaccaactgaaaatcgctgtaaagaggaaggatgaattataactggacatttcg |
12101491 |
T |
|
| Q |
507 |
tactagctaccttttatatgttccttcatatgaattgattccataatacttgtaaggttctatatgtgcttcttcattaaattaaattgcaaagattcat |
606 |
Q |
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| T |
12101492 |
tactagctaccttttatatgttccttcatatgaattgattccataatacttgtaaggttctatatgtgctgcttcattaaattaaattgcaaagattcat |
12101591 |
T |
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| Q |
607 |
tcagtcatattgtactcatcttatttattgcataatgatcacaattcacaacccttgcacataattttaaacacaaataaaatgagagagtcataatagt |
706 |
Q |
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| T |
12101592 |
tcagtcataatgtactcatcttatttattgcataatgatcacaactcacaacccttgcacataattttaaacacaaataaaatgagagagtcataatagt |
12101691 |
T |
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| Q |
707 |
atatgagaaaatatgaaa |
724 |
Q |
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| T |
12101692 |
atatgagaaaatatgaaa |
12101709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 12101089 - 12101206
Alignment:
| Q |
186 |
atatataacttttctcacattgattttgattcagactaagagggaaactccaaagagctactttttctatctcaaaggatccttgcaattcaaccaatgg |
285 |
Q |
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| T |
12101089 |
atatataacttttctcacattgattttgattcagactaagagggaaactccaaagagctactttttctatctcaaaggatccttgcaattcaactaatgg |
12101188 |
T |
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| Q |
286 |
gatgctggtagatgttct |
303 |
Q |
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||||||||| |||||||| |
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| T |
12101189 |
gatgctggtggatgttct |
12101206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 12100852 - 12100967
Alignment:
| Q |
70 |
gagcaaggcagcagaacatgcaggaaaccatgtgaaagaacacaacaattgacaat--------tagcaaacatcatattaatcttaactcatgagaagc |
161 |
Q |
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| T |
12100852 |
gagcaaggcagcagaacatgcaggaaatcatgtgaaagaacacaacaattgacaattaaagcagtagcaaacatcatattaatcttaactcatgagaagc |
12100951 |
T |
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| Q |
162 |
ttgcagtttagaaatt |
177 |
Q |
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| T |
12100952 |
ttgcagtttagaaatt |
12100967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 12100968 - 12101032
Alignment:
| Q |
208 |
attttgattcagactaagagggaaactccaaagagctactttttctatctcaaaggatccttgca |
272 |
Q |
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| T |
12100968 |
attttgattcagactaagagggaaactccaaagagctactttttctatctcaaaggatccttgca |
12101032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 12100811 - 12100856
Alignment:
| Q |
11 |
gaagcagagatgaatacattagaaaaataatggtaaactttgagca |
56 |
Q |
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| T |
12100811 |
gaagcagacatgaatacattagaaaaataatggtaaactttgagca |
12100856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 12088763 - 12088812
Alignment:
| Q |
241 |
agctactttttctatctcaaaggatccttgcaattcaaccaatgggatgc |
290 |
Q |
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||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
12088763 |
agctattttttctatctcaaaggaccctcgcaattcaaccaatgggatgc |
12088812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 12110983 - 12111041
Alignment:
| Q |
392 |
gtcactaaaatggttcgagaaatggaatctgtgtcggttgattcaataattaagggaag |
450 |
Q |
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| T |
12110983 |
gtcactaaaatgggtagagaaagggaatatgtgttagttgattcaataattaagggaag |
12111041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 452
Target Start/End: Original strand, 12089899 - 12090003
Alignment:
| Q |
347 |
aatgttatgataccaataaaataaaaattatgtcatcaaaggagagtcactaaaatggttcgagaaatggaatctgtgtcggttgattcaataattaagg |
446 |
Q |
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|||||||||||| |||| ||| ||||| ||||||||||| | ||||||||||||||| ||||| ||||| || | ||||||||||||||||||| |
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| T |
12089899 |
aatgttatgatatcaatgaaagaaaaaccatgtcatcaaaatggggtcactaaaatggttatagaaagggaataggt-ttagttgattcaataattaagg |
12089997 |
T |
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| Q |
447 |
gaagat |
452 |
Q |
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|||||| |
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| T |
12089998 |
gaagat |
12090003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 625
Target Start/End: Original strand, 12090191 - 12090227
Alignment:
| Q |
589 |
taaattgcaaagattcattcagtcatattgtactcat |
625 |
Q |
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| T |
12090191 |
taaattgcaaagattcattctgtcatattgtactcat |
12090227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 12101037 - 12101073
Alignment:
| Q |
186 |
atatataacttttctcacattgattttgattcagact |
222 |
Q |
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| T |
12101037 |
atatataaattttctcacattgattttgattcagact |
12101073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 18421285 - 18421335
Alignment:
| Q |
307 |
cttcaaccttaaggataaggttgattttaatggtggtggtaatgttatgat |
357 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
18421285 |
cttcaaccttgaggagaaggttgattttaatggtgggagtaatgttatgat |
18421335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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