View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_10 (Length: 409)
Name: NF11461_low_10
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 23 - 394
Target Start/End: Complemental strand, 41565936 - 41565564
Alignment:
| Q |
23 |
aggacattcaagccacattcaagaacaatgatccatgaacacctaatttcatctgatttgagccaccaccaccattgttgttgttatcatcatcattaga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41565936 |
aggacattcaagccacattcaagaacaatgatccatgaacacctaatttcatctgatttgagccaccaccaccattgttgttgttatcatcatcattaga |
41565837 |
T |
|
| Q |
123 |
aggatcatcatagttattacgaccatcacattccttacacgattgattaatatcaaaagcattcttcaaaacattttcagc--taacttcctttctgcaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41565836 |
aggatcatcatagttattacgaccatcacattccttacacgattgattaatatcaaaagcattcttcaaaacattttcagctataacttcctttctgcaa |
41565737 |
T |
|
| Q |
221 |
actcatcctttttcttactataagctatagcggcttctatatcatcatcaaaattaccaagccacttccttgttttttcaaatggatcacaattttcagc |
320 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41565736 |
actcatcctttttcttactataagctatagcagcttctatatcatcatcaaaattaccaagccacttccttgttttttcaaatggatcacaattttcagc |
41565637 |
T |
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| Q |
321 |
agaataccttccccaatgtctaaagccatacacctttgaacttactagttggagtcttgtttggattgatgtcc |
394 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41565636 |
agaataccttccccattgtct-aagccatacacctttgaacttactagttggagtcttgtttggattgatgtcc |
41565564 |
T |
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