View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11461_low_11 (Length: 398)

Name: NF11461_low_11
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11461_low_11
NF11461_low_11
[»] chr4 (7 HSPs)
chr4 (159-383)||(40843820-40844056)
chr4 (21-264)||(48832485-48832716)
chr4 (21-248)||(48817882-48818109)
chr4 (18-127)||(40844053-40844162)
chr4 (94-226)||(15827876-15828008)
chr4 (109-227)||(48792419-48792537)
chr4 (280-375)||(48832353-48832457)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 159 - 383
Target Start/End: Complemental strand, 40844056 - 40843820
Alignment:
Q  159 atatttgtgcaggactgttgtttggacaagagaatactcttctttggttaaagggtcaagtgggtgttgaaaatgcaatggggtaacagaaactacgact 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40844056 atatttgtgcaggactgttgtttggacaagagaatactcttctttggttaaagggtcaagtgggtgttgaaaatgcaatggggtaacggaaactacgact 40843957  T
Q  259 tgtaaga------------gggttaagaaaagagcaaattttatggtggtggaagccattgtgagctctatagcttatgtttgttgtgtggaattgaagc 346  Q
    |||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40843956 tgtaagaagaggagtgtcagggttaagaaaagagcaaattttatggtggtggaagccattgtgagctctatagcttatgtttgttgtgtggaattgaagc 40843857  T
Q  347 tctaggtgatgcccttaaatatacattttcttccatc 383  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  40843856 tctaggtgatgcccttaaatatacaatttcctccatc 40843820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 48832716 - 48832485
Alignment:
Q  21 attgatgatagcaatgacaaaggctttacgagggattgttataacacttggtttcgaagattcccatttgagaatatcatctttttcagggtcatctaag 120  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||| |    
T  48832716 attgatgatagcaatgataaaggctttacgagggatagttatagcacttggtttgaaagattcccatttgagaatagcatctttttcagggtcatctagg 48832617  T
Q  121 ccaatatagtgaaaagctactttgttttttgaggtgggatatttgtgcaggactgttgtttggacaagagaatactcttctttggttaaagggtcaagtg 220  Q
    ||||||||||| ||||||||||            ||||||||||||| |||||| || |||||||||||||||||||||  | ||||||||||||||| |    
T  48832616 ccaatatagtggaaagctactt------------tgggatatttgtgtaggactattttttggacaagagaatactctttatcggttaaagggtcaagag 48832529  T
Q  221 ggtgttgaaaatgcaatggggtaacagaaactacgacttgtaag 264  Q
    ||||||||||||| |||||||| |||||||||||| ||| ||||    
T  48832528 ggtgttgaaaatgtaatggggtgacagaaactacggcttataag 48832485  T

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Target: chr4; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 48817882 - 48818109
Alignment:
Q  21 attgatgatagcaatgacaaaggctttacgagggattgttataacacttggtttcgaagattcccatttgagaatatcatctttttcagggtcatctaag 120  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |      
T  48817882 attgatgatagcaatgataaaggctttacgagggatagttataacacttggtttcaaagtttcccatttgagaatagcatctttttcagggtcatcaaga 48817981  T
Q  121 ccaatatagtgaaaagctactttgttttttgaggtgggatatttgtgcaggactgttgtttggaca-agagaatactcttctttggttaaagggtcaagt 219  Q
    ||||||||||| |||| |||| |||| |||||||||||||||||||   |||||   |||||||||   |||| ||||||||||||||||||| ||||||    
T  48817982 ccaatatagtggaaagatactgtgttctttgaggtgggatatttgttatggactagggtttggacagtcagaa-actcttctttggttaaaggatcaagt 48818080  T
Q  220 gggtgttgaaaatgcaatggggtaacaga 248  Q
    || ||||||||||||||||| ||||||||    
T  48818081 ggatgttgaaaatgcaatggtgtaacaga 48818109  T

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Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 40844162 - 40844053
Alignment:
Q  18 gttattgatgatagcaatgacaaaggctttacgagggattgttataacacttggtttcgaagattcccatttgagaatatcatctttttcagggtcatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40844162 gttattgatgatagcaatgacaaaggctttacgagggattgttataacacttggtttcgaagatacccatttgagaatatcatctttttcagggtcatct 40844063  T
Q  118 aagccaatat 127  Q
    ||||||||||    
T  40844062 aagccaatat 40844053  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 15827876 - 15828008
Alignment:
Q  94 atatcatctttttcagggtcatctaagccaatatagtgaaaagctactttgttttttgaggtgggatatttgtgcaggactgttgtttggaca-agagaa 192  Q
    |||| |||||| || |||||||||| |||||||||||| |||||||||||||| ||||||||| |||||||||   |||||   |||||||||   ||||    
T  15827876 atataatctttgtcggggtcatctaggccaatatagtggaaagctactttgttctttgaggtgtgatatttgttatggactaaggtttggacagttagaa 15827975  T
Q  193 tactcttctttggttaaagggtcaagtgggtgtt 226  Q
     |||||||||||||||||||||||||||| ||||    
T  15827976 -actcttctttggttaaagggtcaagtggatgtt 15828008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 48792419 - 48792537
Alignment:
Q  109 gggtcatctaagccaatatagtgaaaagctactttgttttttgaggtgggatatttgtgcaggactgttgtttggaca-agagaatactcttctttggtt 207  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||   |||||   |||||||||   |||| ||||||| ||||||    
T  48792419 gggtcatcaaggccaatatagtggaaagctactttgttttttgaggtgggatatttgttatggactagggtttggacagttagaa-actcttcattggtt 48792517  T
Q  208 aaagggtcaagtgggtgttg 227  Q
    |||||||||||||| |||||    
T  48792518 aaagggtcaagtggatgttg 48792537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 48832457 - 48832353
Alignment:
Q  280 gcaaattttatggtggtggaagccattgtgagct----------ctatagcttatgtttgttgtgtggaattgaagctctaggtgatgcccttaaatata 369  Q
    ||||| || |||||||||||||||||||||||||          |||||| || ||||| |||||||||||||||||| ||||||||| ||||| ||| |    
T  48832457 gcaaacttaatggtggtggaagccattgtgagctagcttgagctctatagtttgtgttt-ttgtgtggaattgaagctgtaggtgatgtccttatataca 48832359  T
Q  370 catttt 375  Q
    ||||||    
T  48832358 catttt 48832353  T

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