View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_5 (Length: 490)
Name: NF11461_low_5
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 2480863 - 2480735
Alignment:
| Q |
15 |
caaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcaccct |
114 |
Q |
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| T |
2480863 |
caaaggcattaggcaccaatcgatcatggtacaacgtaacaagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcaccct |
2480764 |
T |
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| Q |
115 |
ttactgtaatctacttctccaacactata |
143 |
Q |
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| T |
2480763 |
ttactgtaatctacttctccaacactata |
2480735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 378 - 472
Target Start/End: Complemental strand, 2480674 - 2480580
Alignment:
| Q |
378 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaa |
472 |
Q |
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| T |
2480674 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaa |
2480580 |
T |
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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 470
Target Start/End: Original strand, 49532564 - 49532651
Alignment:
| Q |
383 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatgg |
470 |
Q |
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| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatgg |
49532651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 49532342 - 49532403
Alignment:
| Q |
55 |
aagttcagaggagttagacaacgacagtggggctcatgggtctcagaaattcgtcacccttt |
116 |
Q |
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| T |
49532342 |
aagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccacccttt |
49532403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 47101420 - 47101353
Alignment:
| Q |
385 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagc |
452 |
Q |
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| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagc |
47101353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
385 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
455 |
Q |
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| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 2428746 - 2428673
Alignment:
| Q |
385 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccat |
458 |
Q |
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| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccat |
2428673 |
T |
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