View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_6 (Length: 482)
Name: NF11461_low_6
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 38521694 - 38521958
Alignment:
| Q |
1 |
atacctgaaaaacttgttcatcaaagtgaccaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttctacaaacagtgagtcccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38521694 |
atacctgaaaaacttgttcatcaaagtgaccaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttctacaaacagtgagtcccat |
38521793 |
T |
|
| Q |
101 |
attagccccagttttcagcatttgacgaaccttaaatcgcgaagtaaaatcgacagaatgatccatcaaccaataagaattccacccattcacataaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38521794 |
attagccccagttttcagcatttgacgaaccttaaatcgcgaagtaaaatcgacagaatgatccatcaaccaataagaattccacccattcacataaaac |
38521893 |
T |
|
| Q |
201 |
acattcccatccaacacaaactgtgtcccatttctcatcacaaaacccatttctctcacttcttc |
265 |
Q |
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| T |
38521894 |
acattcccatccaacacaaactgtgtcccatttctcatcacaaaacccatttctctcccttcttc |
38521958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 345 - 463
Target Start/End: Original strand, 38522038 - 38522157
Alignment:
| Q |
345 |
ccatttcctgcaaacattatctcacaacaaaattcaacaaaataaagatacccttc-gattttttcctcaaagggtcactaaattagtaaaccttgatga |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522038 |
ccatttcctgcaaacattatctcacaacaaaattcaacaaaataaagatacccttttgattttttcctcaaagggtcactaaattagtaaaccttgatga |
38522137 |
T |
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| Q |
444 |
aaattattgaacctcgcact |
463 |
Q |
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| T |
38522138 |
aaattattgaacctcacact |
38522157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 30129820 - 30129942
Alignment:
| Q |
1 |
atacctgaaaaacttgttcatcaaagtgaccaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttctacaaacagtgagtcccat |
100 |
Q |
| |
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|||||| |||| ||||||||||||| |||||||||| | ||||| |||||||| | ||||||||| ||||||||||||||||||||||| || ||||| |
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| T |
30129820 |
ataccttaaaagcttgttcatcaaaaacaccaggtgaagtctgaagggcattatagtcaccatcattaaaagcccaagttctacaaacagttagacccat |
30129919 |
T |
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| Q |
101 |
attagccccagttttcagcattt |
123 |
Q |
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|||||||||| ||| ||||||| |
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| T |
30129920 |
tttagccccagctttgagcattt |
30129942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 45891797 - 45891744
Alignment:
| Q |
29 |
accaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttct |
82 |
Q |
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||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |
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| T |
45891797 |
accaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttct |
45891744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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