View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_7 (Length: 475)
Name: NF11461_low_7
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Original strand, 2485742 - 2486189
Alignment:
| Q |
11 |
cagagatagcgggaactctcataagatcaccatttccagaaatcaaaacacacattaccttactaccatgaaaacaaaggacatgattgatccttcttcc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2485742 |
cagaaatagcgggaactctcataagatcaccatttccagaaatcaaaacacacattaccttaataccatgaaaacaaaggacatgattgatccttcttcc |
2485841 |
T |
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| Q |
111 |
atatctctctaaaattttcaacattcacgtattggatacatattcattcagtttttacgtttaattttttgaaagtaaattaaaaatggaacagaaagga |
210 |
Q |
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| T |
2485842 |
atatctctctaaaattttcaacattcacgtattggatacatattcattcagtttttacggttaattttttgaaagtaaattaaaaatggaacagaaagga |
2485941 |
T |
|
| Q |
211 |
atgttgatatcagccgcgcttagcgttggtgttggagttggccttggcttggcttctggacaaaccatgtttaaacctaatacttactcctcctcctcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2485942 |
atgttgatatcagccgcgcttagcgttggtgttggagttggccttggcttggcttctggacaaaccatgtttaaacctaatacttactcctcctcctcca |
2486041 |
T |
|
| Q |
311 |
acgccctcactcctgacaagattgaaaacgaaatgctacgactcattgttgatggtagagaaagcaatgtcacctttgataatttcccttattatctcag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486042 |
acgccctcactcctgacaagattgaaaacgaaatgctacgactcgttgttgatggtagagaaagcaatgtcacctttgataatttcccttattatctcag |
2486141 |
T |
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| Q |
411 |
gtatattatcgattcattctccttttattttcctattttccatgatac |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2486142 |
gtatattatcgattcattctccttttattttcctattttccatcatac |
2486189 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 41595088 - 41595036
Alignment:
| Q |
355 |
attgttgatggtagagaaagcaatgtcacctttgataatttcccttattatct |
407 |
Q |
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||||||||||| ||||||||||| || || |||||||| |||||||||||||| |
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| T |
41595088 |
attgttgatggcagagaaagcaacgttacttttgataaattcccttattatct |
41595036 |
T |
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