View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11461_low_8 (Length: 456)
Name: NF11461_low_8
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 52609878 - 52609444
Alignment:
| Q |
10 |
agaagaaagaaaaacaaaaattcacttagaaggcaagatccacacttatatacaatatacaataaatctgaaaaatgtgattcattctccttaaatcgac |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52609878 |
agaagaaagaaaaacaaaaactcacttagaaggcaagatccacacttatatacaatatacaataaatctggaaaatgtgattcattctccttaaatcgac |
52609779 |
T |
|
| Q |
110 |
aaattacatattaacataaaattcaataatcccaacctttgccacaaacaaacgcactcgcaaatatcacaccttcatcaaacatcctttgacgagtgtc |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52609778 |
aaattacatattgacataaaattcaataatcccaacctttgccacaaacaaacgcactcgcaaatatcacaccttcatcaaacatcctttgacgagtgtc |
52609679 |
T |
|
| Q |
210 |
ctcacgcgcgatacaaagcgacaactcaaaaaacataattaaccgacacagtcattatgcatgaaatctaaggctattttgaaatgaaaagacatgtccc |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52609678 |
ctcacgggcgatacaaagcgacaactcaaaaaacataattagccgacacagtcattatgcatgaaatctaaggctattttgaaatgaaaagacatgtccc |
52609579 |
T |
|
| Q |
310 |
ttagcatcattgagacatcctcattctaatcacattgtactcatatgggtaaagacaaaattggga------caccaaacgtgatcatcccttggagcac |
403 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
52609578 |
ttagcatcattgagacctcctcattctaatcacattgtactcatatgggtaaacacaaaattgggactctttcaccaaacgtgatcatcacttggagcac |
52609479 |
T |
|
| Q |
404 |
aagcccaacaaaaataactgcctgaagttaatcgt |
438 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
52609478 |
aagcccaacaaaaataaccgcctgaagttaatcgt |
52609444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University