View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11461_low_9 (Length: 448)
Name: NF11461_low_9
Description: NF11461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11461_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 6615164 - 6615599
Alignment:
| Q |
1 |
gtataagttaccttgtgtaattgctgcacaacctcctgttggtcattttcaccagagatttgaaaccactcatcaaaggtttcagcagaactaaaaattt |
100 |
Q |
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| T |
6615164 |
gtataagttaccttgtgtaattgctgcacaacctcctgttggtcattttcaccagagatttgaaaccactcatcaaaggtttcagcagaactaaaaattt |
6615263 |
T |
|
| Q |
101 |
caggcagaagaaagttgagaagagaccaaagttcatgaagattattctgtaccaataaaaaaggtcaggaacagcagtaaatacttgaatgagcatatac |
200 |
Q |
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| T |
6615264 |
caggcagaagaaagttgagaagagaccaaagttcatgaagattattctgtaccaataaaaaaggtcaggaacagcagtaaatacttgaatgagcatatac |
6615363 |
T |
|
| Q |
201 |
aaacnnnnnnntaatactggaagggaagggagtcataatccacagttataactaatcccgaaaaaacataattcagcaattgagctgcaaaactgaagta |
300 |
Q |
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| T |
6615364 |
aaacaaaaaaataatactggaagggaagggagtcataatccacagttataaataatcccgaaaaaacataattcagcaattgagctgcaagactgaagta |
6615463 |
T |
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| Q |
301 |
aaatccaacaagaacactaaataacaaaactaaaactttaatcaatgcaaagttatatatcatctaactcttagatcatgttaatcaaactcattt--ct |
398 |
Q |
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| T |
6615464 |
aaatccaacaagaacactaaataacaaaactaaaactttaatcaatgcaaagttatatatcatctaactcttagatcatgttaatcaaactcatttgact |
6615563 |
T |
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| Q |
399 |
gttaacaaaatcttgagcagcaactcaatgcaaatg |
434 |
Q |
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| T |
6615564 |
gttaacaaaatcttgagcagcaactcaatgcaaatg |
6615599 |
T |
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Back To:
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Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 49255830 - 49255709
Alignment:
| Q |
28 |
acaacctcctgttggtcattttcaccagagatttgaaaccactcatcaaaggtttcagcagaactaaaaatttcaggcagaagaaagttgagaagagacc |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49255830 |
acaacctcctgttggtcattttcaccagagatttgaaaccattcatcaaaagtttcagcagaactaaaaatttcaggcagaagaaagttgagaagagacc |
49255731 |
T |
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| Q |
128 |
aaagttcatgaagattattctg |
149 |
Q |
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| T |
49255730 |
aaagttcatgaagattgttctg |
49255709 |
T |
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